PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_6393_iso_8

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

C2H2

Protein Properties

Length: 256aa MW: 29308.1 Da PI: 9.6311

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_6393_iso_8	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.9	0.00034	99	121	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C+ C+++++++ +L H + H cra_locus_6393_iso_8_len_1277_ver_3 99 SCSVCSRVYPTSRLLSIHVSEvH 121 6*****************99877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00355	0.26	71	96	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	73	96	IPR007087	Zinc finger, C2H2
SMART	SM00355	2.1	98	121	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	100	121	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.42	136	161	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	138	161	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 256 aa Download sequence Send to blast
XPSMAMEVEV NTESLGFPYW RPIRRRLPPG SPFFRSGDIE RELLVKQVAL DLTEEEKQQI 60 RHMEDQESSK IFCPIVGCGA HLKSLDAFED HYMARHSASC SVCSRVYPTS RLLSIHVSEV 120 HDSFFQAKVA RGFPMYECLV EGCGVKLKNY KSRQQHLVDK HKFPTSFEFF KKAPPSKKQR 180 QKNQQKKSLA NTEEVSRTMQ IDRDATNDLV SAISKLSTSD TPSSISFGRR NTRGLTFVPR 240 AVQRDRRPDS SDEMKT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	176	182	KKQRQKN

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002270554.1	1e-133	PREDICTED: zinc finger protein 511
TrEMBL	A0A2R6RJX9	1e-132	A0A2R6RJX9_ACTCH; Zinc finger protein
STRING	VIT_14s0068g01930.t01	1e-132	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA10211	20	22