PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_6442_iso_2

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

Dof

Protein Properties

Length: 346aa MW: 36580.9 Da PI: 7.5284

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_6442_iso_2	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.2	8.8e-39	42	101	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +++alkcprCds ntkfCyynny+lsqPr+fCk+CrryWtkGG lrnvPvGgg+rk k+s cra_locus_6442_iso_2_len_1653_ver_3 42 NQQALKCPRCDSLNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGVLRNVPVGGGCRKTKRS 101 6899*****************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	2.8E-33	44	100	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	4.0E-27	44	100	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.618	46	100	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	48	84	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 346 aa Download sequence Send to blast
MQDIHAIGGG GGGGAVAGGG GRLFASGTGG GDRRLRPHHN QNQQALKCPR CDSLNTKFCY 60 YNNYNLSQPR HFCKSCRRYW TKGGVLRNVP VGGGCRKTKR SKPKPTVSSD AAAAASAAAP 120 SMEHNSNSHS SSESSSLTAT TTAAKNTATT AGGSSGEVAS ATVNSSNTST NLLSFQNSAR 180 FFASPQQFNA SSSFDQQQQQ LIDPSVSSNG QMFQEIGSFT SLMTSSNDPS LLGYNVADVS 240 TYRLQQNHHA VDDRSSNQMM GSTGEDDLKM EPINCGFLDQ TAQIGFSGLH QGRMNNGGLG 300 GLDWQMNGGG GGDQGLFDFT GTVDQTYWGQ NQWGDNDQSL NFPPLV

Sequence ? help Back to Top

Protein Sequence Length: 346 aa Download sequence Send to blast

MQDIHAIGGG GGGGAVAGGG GRLFASGTGG GDRRLRPHHN QNQQALKCPR CDSLNTKFCY  60
YNNYNLSQPR HFCKSCRRYW TKGGVLRNVP VGGGCRKTKR SKPKPTVSSD AAAAASAAAP  120
SMEHNSNSHS SSESSSLTAT TTAAKNTATT AGGSSGEVAS ATVNSSNTST NLLSFQNSAR  180
FFASPQQFNA SSSFDQQQQQ LIDPSVSSNG QMFQEIGSFT SLMTSSNDPS LLGYNVADVS  240
TYRLQQNHHA VDDRSSNQMM GSTGEDDLKM EPINCGFLDQ TAQIGFSGLH QGRMNNGGLG  300
GLDWQMNGGG GGDQGLFDFT GTVDQTYWGQ NQWGDNDQSL NFPPLV

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00570	DAP	Transfer from AT5G60850	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027126696.1	1e-138	dof zinc finger protein DOF5.4-like
Refseq	XP_027167428.1	1e-138	dof zinc finger protein DOF5.4-like
Refseq	XP_027167429.1	1e-138	dof zinc finger protein DOF5.4-like
TrEMBL	A0A068TRH1	1e-135	A0A068TRH1_COFCA; Uncharacterized protein
STRING	XP_009779672.1	5e-84	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA88	24	419