PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_6447_iso_2

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

C2H2

Protein Properties

Length: 179aa MW: 19614.5 Da PI: 8.6912

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_6447_iso_2	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13	0.0003	95	117	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H + + cra_locus_6447_iso_2_len_1080_ver_3 95 WKCDKCSKKYAVQSDWKAHSKIC 117 58*****************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	1.8E-4	83	116	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.85E-5	91	132	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 179 aa Download sequence Send to blast
MPVDIDNSSA MNDSTASGEA SASSSGNQAA PPPKPAVKKK RNLPGMPDPD XXXXXXXXXX 60 XXXXXXXXXX XXXRALGDLT GIKKHFCRKH GEKKWKCDKC SKKYAVQSDW KAHSKICGTR 120 EYKCDCGTLF SRRDSFITHR AFCDALAEES AKTQTVEAPP SADTDPKLQS PAVLAVVEV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	4e-37	91	156	3	68	Zinc finger protein JACKDAW
5b3h_F	4e-37	91	156	3	68	Zinc finger protein JACKDAW
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022855799.1	7e-59	protein indeterminate-domain 2-like
TrEMBL	A0A068U3D8	4e-56	A0A068U3D8_COFCA; Uncharacterized protein
TrEMBL	A0A2G9G982	5e-56	A0A2G9G982_9LAMI; Ovo transcription factor
TrEMBL	A0A438GID8	3e-56	A0A438GID8_VITVI; Protein indeterminate-domain 1
TrEMBL	F6GWY3	4e-56	F6GWY3_VITVI; Uncharacterized protein
STRING	VIT_04s0023g01430.t01	6e-57	(Vitis vinifera)