PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_6447_iso_5

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

C2H2

Protein Properties

Length: 498aa MW: 51383.2 Da PI: 6.2537

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_6447_iso_5	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.2	0.0011	95	117	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H + + cra_locus_6447_iso_5_len_2394_ver_3 95 WKCDKCSKKYAVQSDWKAHSKIC 117 58*****************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	7.3E-4	83	116	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	7.64E-5	90	139	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 498 aa Download sequence Send to blast
MPVDIDNSSA MNDSTASGEA SASSSGNQAA PPPKPAVKKK RNLPGMPDPD XXXXXXXXXX 60 XXXXXXXXXX XXXRALGDLT GIKKHFCRKH GEKKWKCDKC SKKYAVQSDW KAHSKICGTR 120 EYKCDCGTLF SRRDSFITHR AFCDALAEES AKTQTVEAPP SADTDPKLQS PASSPPPPPP 180 PPPAAEPAPP APPPCTAVIQ SSTLPIETPE EPENPNKNPT SPQILEEVSA MTTLTAGCSS 240 SSSSSCSGST TSSVFASLFA SSTATESLQS SSSGFTDLFR AVARPESTSE VIPSSSTEPI 300 SLCLATNQGS SIFGTAGQER RQYAPPPQPA LSATALLQKA AQIGAAATNA SLLRGFGIVS 360 SSSSTTGQQE WSGRPIESDN GLAAGLGLGL PCDGGSGLKE LMLGTPSVFG PKHTTLDLLG 420 LGMAAGAGPT GGLSALMTSI GGGLDVATAA ASFGGSEYTA KDLGRGSXHG XFSANQSILL 480 VVYGGRYEVA TDLAQKCT

Sequence ? help Back to Top

Protein Sequence Length: 498 aa Download sequence Send to blast

MPVDIDNSSA MNDSTASGEA SASSSGNQAA PPPKPAVKKK RNLPGMPDPD XXXXXXXXXX  60
XXXXXXXXXX XXXRALGDLT GIKKHFCRKH GEKKWKCDKC SKKYAVQSDW KAHSKICGTR  120
EYKCDCGTLF SRRDSFITHR AFCDALAEES AKTQTVEAPP SADTDPKLQS PASSPPPPPP  180
PPPAAEPAPP APPPCTAVIQ SSTLPIETPE EPENPNKNPT SPQILEEVSA MTTLTAGCSS  240
SSSSSCSGST TSSVFASLFA SSTATESLQS SSSGFTDLFR AVARPESTSE VIPSSSTEPI  300
SLCLATNQGS SIFGTAGQER RQYAPPPQPA LSATALLQKA AQIGAAATNA SLLRGFGIVS  360
SSSSTTGQQE WSGRPIESDN GLAAGLGLGL PCDGGSGLKE LMLGTPSVFG PKHTTLDLLG  420
LGMAAGAGPT GGLSALMTSI GGGLDVATAA ASFGGSEYTA KDLGRGSXHG XFSANQSILL  480
VVYGGRYEVA TDLAQKCT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	1e-35	91	156	3	68	Zinc finger protein JACKDAW
5b3h_F	1e-35	91	156	3	68	Zinc finger protein JACKDAW
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269\|PubMed:21571950, ECO:0000269\|PubMed:25035403}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027074557.1	0.0	zinc finger protein GAI-ASSOCIATED FACTOR 1-like
Swissprot	Q9LVQ7	1e-106	IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBL	A0A068U3D8	1e-174	A0A068U3D8_COFCA; Uncharacterized protein
STRING	VIT_04s0023g01430.t01	1e-172	(Vitis vinifera)

Publications ? help Back to Top
Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]