PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_6475_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

Protein Properties

Length: 180aa MW: 20282.4 Da PI: 4.9953

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_6475_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	49.6	6.9e-16	44	144	2	99
EEE-..-HHHHT.T-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHH CS B3 2 fkvltpsdvlks.grlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvka 71 + l+ sd+ + +rl+lpk++ae++ +++++++ ++++d++g+ Wev+++y ++++++++ +G +e + cra_locus_6475_iso_1_len_1041_ver_3 44 EILLSASDADHNlSRLILPKRCAEAFfpDISEPRGLPIMIRDTEGKDWEVNYRYwINSGCKMYIVEGLRELMIS 117 56677777777679************888889999************94455556999****** PP HT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 72 ngLkegDfvvFkldgrsefelvvkvfrk 99 ++ ++gD+v+F ++ +++lv++++++ cra_locus_6475_iso_1_len_1041_ver_3 118 KRWQAGDTVTFFKVE-PGGKLVIGLRKA 144 *********9443.999999999876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.5E-22	39	145	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.16E-17	40	143	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	4.39E-20	41	143	No hit	No description
SMART	SM01019	1.7E-15	43	145	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	10.56	44	145	IPR003340	B3 DNA binding domain
Pfam	PF02362	2.3E-12	46	144	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 180 aa Download sequence Send to blast
XYTFPSSGMD FNMRNETQAF CKFEYSGWPL HNCSSDSVVT PLFEILLSAS DADHNLSRLI 60 LPKRCAEAFF PDISEPRGLP IMIRDTEGKD WEVNYRYWIN SGCKMYIVEG LRELMISKRW 120 QAGDTVTFFK VEPGGKLVIG LRKASGYQPP NENSSXSIQT ENQDGAVGNI LSNSMQLTSP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j9a_A	7e-36	39	145	20	125	B3 domain-containing transcription repressor VAL1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027061772.1	5e-62	B3 domain-containing protein Os07g0563300-like isoform X1
Swissprot	Q6Z3U3	2e-35	Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
TrEMBL	A0A068UBK4	3e-56	A0A068UBK4_COFCA; Uncharacterized protein
STRING	Migut.H01903.1.p	1e-45	(Erythranthe guttata)

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]