PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_6475_iso_2

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

Protein Properties

Length: 292aa MW: 33064.3 Da PI: 6.1611

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_6475_iso_2	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	48	2.2e-15	156	256	2	99
EEE-..-HHHHT.T-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHH CS B3 2 fkvltpsdvlks.grlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvka 71 + l+ sd+ + +rl+lpk++ae++ +++++++ ++++d++g+ Wev+++y ++++++++ +G +e + cra_locus_6475_iso_2_len_1435_ver_3 156 EILLSASDADHNlSRLILPKRCAEAFfpDISEPRGLPIMIRDTEGKDWEVNYRYwINSGCKMYIVEGLRELMIS 229 55677777776679************888889999************94455556999****** PP HT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 72 ngLkegDfvvFkldgrsefelvvkvfrk 99 ++ ++gD+v+F ++ +++lv++++++ cra_locus_6475_iso_2_len_1435_ver_3 230 KRWQAGDTVTFFKVE-PGGKLVIGLRKA 256 *********9443.999999999876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	3.79E-17	152	255	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	7.4E-22	152	257	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	4.33E-19	153	255	No hit	No description
SMART	SM01019	1.7E-15	155	257	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	10.56	156	257	IPR003340	B3 DNA binding domain
Pfam	PF02362	7.2E-12	159	256	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 292 aa Download sequence Send to blast
MASSSRIACF QCEESSSNFD HFKNGWRLRS GEFAQLCHRC SSVYEEGRFC ETFHSNDDGW 60 RDCESCGKLV HCGCVVSFNA YLLLDFGGVI CMECSRINFK LARHRCLALE SQLLFGSHQD 120 MIRQNMIELP NWPRVTEAEL QKISRPSDSV VTPLFEILLS ASDADHNLSR LILPKRCAEA 180 FFPDISEPRG LPIMIRDTEG KDWEVNYRYW INSGCKMYIV EGLRELMISK RWQAGDTVTF 240 FKVEPGGKLV IGLRKASGYQ PPNENSSXSI QTENQDGAVG NILSNSMQLT SP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j9a_A	5e-38	133	257	2	125	B3 domain-containing transcription repressor VAL1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027061772.1	1e-146	B3 domain-containing protein Os07g0563300-like isoform X1
TrEMBL	A0A068UBK4	1e-140	A0A068UBK4_COFCA; Uncharacterized protein
STRING	Migut.H01903.1.p	1e-110	(Erythranthe guttata)