PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_6516_iso_2

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

LBD

Protein Properties

Length: 238aa MW: 25849 Da PI: 7.1515

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_6516_iso_2	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	92.8	4.1e-29	2	103	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAeara 69 +C++C+vlr++C+++C+l+p++ p++q ++ +v+k+FG++ ++++++a+p+++r+++++sl++eA cra_locus_6516_iso_2_len_1237_ver_3 2 SCNGCRVLRKGCSENCILRPCLqwietPESQGYATVFVAKFFGRAGLMSFISAVPDNQRPALFQSLLFEAAEGX 75 6*********************************************************************** PP DUF260 70 rdPvyGavgvilklqqqleqlkaelall 97 +Pv+Gavg++++++++++q+++e++l+ cra_locus_6516_iso_2_len_1237_ver_3 76 VNPVNGAVGLLWTGNWHVCQAAVETVLR 103 ********************998876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	18.759	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.4E-24	2	101	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006807	Biological Process	nitrogen compound metabolic process
GO:0060776	Biological Process	simple leaf morphogenesis

Sequence ? help Back to Top
Protein Sequence Length: 238 aa Download sequence Send to blast
MSCNGCRVLR KGCSENCILR PCLQWIETPE SQGYATVFVA KFFGRAGLMS FISAVPDNQR 60 PALFQSLLFE AAEGXVNPVN GAVGLLWTGN WHVCQAAVET VLRGGTLRPI QEFLVGSGGG 120 SAEIDEASEC TTTTDMFKFN GQDHPLPSGR SSNNKVQKRR RLPDFSSSQG GGGGKVMQLA 180 DLDLSLTPGF QSKLNDVVSN PFYVKRRIGS PSLNSEESVT TTCFESDQLQ PRLLNLFN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	157	161	KRRRL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009626676.1	1e-107	PREDICTED: LOB domain-containing protein 37
Swissprot	Q9FN11	2e-74	LBD37_ARATH; LOB domain-containing protein 37
TrEMBL	A0A1S4AJK0	1e-105	A0A1S4AJK0_TOBAC; LOB domain-containing protein 37-like
TrEMBL	A0A2G9HZ72	1e-105	A0A2G9HZ72_9LAMI; Uncharacterized protein
STRING	XP_009626676.1	1e-106	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA966	24	90

Publications ? help Back to Top
Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465]