PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_6519_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

WRKY

Protein Properties

Length: 59aa MW: 6752.49 Da PI: 10.5174

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_6519_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	54.3	2.8e-17	30	58	1	29
---SS-EEEEEEE--TT-SS-EEEEEE-S CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCts 29 ldDgy+WrKYG+K+vk+s++pr+YYrC+ cra_locus_6519_iso_1_len_289_ver_3 30 LDDGYKWRKYGKKMVKNSPNPRNYYRCSV 58 59*************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	8.1E-19	15	57	IPR003657	WRKY domain
SuperFamily	SSF118290	9.81E-16	22	58	IPR003657	WRKY domain
PROSITE profile	PS50811	17.672	25	59	IPR003657	WRKY domain
SMART	SM00774	2.3E-6	30	59	IPR003657	WRKY domain
Pfam	PF03106	2.7E-12	31	57	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 59 aa Download sequence Send to blast
MCAGDQSGSG SRVGKKEKVA FRTKSQVEIL DDGYKWRKYG KKMVKNSPNP RNYYRCSVX

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023735828.1	7e-24	probable WRKY transcription factor 50
Swissprot	Q8VWQ5	2e-20	WRK50_ARATH; Probable WRKY transcription factor 50
TrEMBL	A0A4D8Y910	2e-22	A0A4D8Y910_SALSN; Uncharacterized protein
STRING	XP_002516104.1	1e-22	(Ricinus communis)
STRING	Solyc08g062490.2.1	3e-22	(Solanum lycopersicum)

Publications ? help Back to Top
Brand LH,Kirchler T,Hummel S,Chaban C,Wanke D DPI-ELISA: a fast and versatile method to specify the binding of plant transcription factors to DNA in vitro. Plant Methods, 2010. 6: p. 25 [PMID:21108821]