PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_6519_iso_3

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

WRKY

Protein Properties

Length: 63aa MW: 7186.09 Da PI: 10.6293

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_6519_iso_3	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	35.6	1.9e-11	41	62	1	22
---SS-EEEEEEE--TT-SS-E CS WRKY 1 ldDgynWrKYGqKevkgsefpr 22 ldDgy+WrKYG+K+vk+s++pr cra_locus_6519_iso_3_len_581_ver_3 41 LDDGYKWRKYGKKMVKNSPNPR 62 59*******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	3.4E-13	26	62	IPR003657	WRKY domain
SuperFamily	SSF118290	5.89E-10	33	62	IPR003657	WRKY domain
PROSITE profile	PS50811	13.563	36	63	IPR003657	WRKY domain
Pfam	PF03106	3.7E-7	42	62	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 63 aa Download sequence Send to blast
SLQQHEGEGL TLTSRDQSGS GSRVGKKEKV AFRTKSQVEI LDDGYKWRKY GKKMVKNSPN 60 PRY

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020984606.1	2e-19	probable WRKY transcription factor 50 isoform X2
Swissprot	Q8VWQ5	6e-15	WRK50_ARATH; Probable WRKY transcription factor 50
TrEMBL	A0A2G9HW23	2e-17	A0A2G9HW23_9LAMI; Uncharacterized protein
STRING	XP_009609331.1	4e-17	(Nicotiana tomentosiformis)
STRING	XP_009617031.1	4e-17	(Nicotiana tomentosiformis)
STRING	PGSC0003DMT400021144	4e-17	(Solanum tuberosum)

Publications ? help Back to Top
Brand LH,Kirchler T,Hummel S,Chaban C,Wanke D DPI-ELISA: a fast and versatile method to specify the binding of plant transcription factors to DNA in vitro. Plant Methods, 2010. 6: p. 25 [PMID:21108821]