PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_65242_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family MYB_related
Protein Properties Length: 106aa    MW: 12205.3 Da    PI: 10.723
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_65242_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.83.2e-151155347
                                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                      Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                                         +WT+eE++l++ + k++G+g+W+ I+r    +Rt+ q+ s+ qky
  cra_locus_65242_iso_1_len_316_ver_3 11 PWTEEEHKLFLMGLKKYGKGDWRNISRNYVITRTPTQVASHAQKY 55
                                         8*****************************89************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.7E-13360IPR009057Homeodomain-like
PROSITE profilePS5129420.742460IPR017930Myb domain
SuperFamilySSF466899.72E-18559IPR009057Homeodomain-like
TIGRFAMsTIGR015571.9E-18759IPR006447Myb domain, plants
SMARTSM007176.7E-13858IPR001005SANT/Myb domain
PfamPF002491.0E-131155IPR001005SANT/Myb domain
CDDcd001672.38E-111156No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 106 aa     Download sequence    Send to blast
XNEQERKKGV PWTEEEHKLF LMGLKKYGKG DWRNISRNYV ITRTPTQVAS HAQKYFIRQL  60
SGGKDKRRAS IHDITTVHLN ENLTTPSPEN KKAPSPVHHP PAKQSX
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011080854.13e-56transcription factor DIVARICATA isoform X1
RefseqXP_020550520.13e-56transcription factor DIVARICATA isoform X2
SwissprotQ8S9H75e-57DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A2R6QSX61e-54A0A2R6QSX6_ACTCH; Transcription factor DIVARICATA like
STRINGXP_002525595.17e-54(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1644955
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]