PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_655_iso_2
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family MIKC_MADS
Protein Properties Length: 228aa    MW: 26691.3 Da    PI: 9.4585
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_655_iso_2genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF92.61.9e-29959151
                                       S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                             SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                                       krien+snrqvt+skRrngi+KKA+E+ vLCda+v++iif+++gk++ey+s
  cra_locus_655_iso_2_len_933_ver_3  9 KRIENSSNRQVTYSKRRNGIMKKAKEITVLCDAKVSLIIFGTSGKMHEYIS 59
                                       79***********************************************86 PP
2K-box84.42.4e-2871161191
                              K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleq 76 
                                        yqk++gk+l++ak+e+l++e++++kke++++q e+Rhl+Ged++sL++keL+ Le++Le+++++iR++++e+++  
  cra_locus_655_iso_2_len_933_ver_3  71 YQKATGKKLWDAKHENLSNEIDRVKKENDSMQIELRHLKGEDITSLNHKELMVLEDALENGISSIRDRQSEIVKIA 146
                                        8999********************************************************************9998 PP

                              K-box  77 ieelqkkekelqeen 91 
                                         ++ q  e+e+++ +
  cra_locus_655_iso_2_len_933_ver_3 147 RKNGQILEEENKQLQ 161
                                        888888888877755 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.8E-39160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.127161IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.26E-35296IPR002100Transcription factor, MADS-box
CDDcd002654.46E-39280No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004045.7E-28323IPR002100Transcription factor, MADS-box
PfamPF003196.3E-231057IPR002100Transcription factor, MADS-box
PRINTSPR004045.7E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004045.7E-283859IPR002100Transcription factor, MADS-box
PfamPF014861.5E-1882161IPR002487Transcription factor, K-box
PROSITE profilePS5129713.60784185IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010093Biological Processspecification of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MGRGKIEIKR IENSSNRQVT YSKRRNGIMK KAKEITVLCD AKVSLIIFGT SGKMHEYISP  60
STNLIDMLDA YQKATGKKLW DAKHENLSNE IDRVKKENDS MQIELRHLKG EDITSLNHKE  120
LMVLEDALEN GISSIRDRQS EIVKIARKNG QILEEENKQL QYFXANGLMI LINYKHFQMQ  180
RHQQELANMK NAVEETEDVY HQRVRDYQSQ MPFAFRVQPM QPNLHERI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6bz1_A3e-17191183MEF2 CHIMERA
6bz1_B3e-17191183MEF2 CHIMERA
6bz1_C3e-17191183MEF2 CHIMERA
6bz1_D3e-17191183MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the genetic control of flower development.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00080ChIP-seqTransfer from AT5G20240Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027089801.11e-129floral homeotic protein PMADS 2-like
RefseqXP_027150624.11e-129floral homeotic protein PMADS 2-like
SwissprotQ074741e-116MADS2_PETHY; Floral homeotic protein PMADS 2
TrEMBLF4ZZ991e-148F4ZZ99_CATRO; Putative GLO1
STRINGXP_009608638.11e-115(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA46802139
Publications ? help Back to Top
  1. Immink RG, et al.
    Analysis of the petunia MADS-box transcription factor family.
    Mol. Genet. Genomics, 2003. 268(5): p. 598-606
    [PMID:12589434]
  2. Kush A,Brunelle A,Shevell D,Chua NH
    The cDNA sequence of two MADS box proteins in Petunia.
    Plant Physiol., 1993. 102(3): p. 1051-2
    [PMID:8278527]