PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_6666_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

LSD

Protein Properties

Length: 254aa MW: 27596.3 Da PI: 3.8465

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_6666_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	40.4	4.8e-13	165	189	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg Cr lLsYPrGA +V+C++C+tV cra_locus_6666_iso_1_len_1788_ver_3 165 CGTCRQLLSYPRGAQYVQCSSCQTV 189 ************************9 PP
2	zf-LSD1	39.6	8.7e-13	203	227	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C++lL+YP+GApsV+C++C +V cra_locus_6666_iso_1_len_1788_ver_3 203 CGSCGVLLMYPYGAPSVKCSSCCFV 227 **********************776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01053	9.2E-16	162	192	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	5.9E-11	165	189	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	1.6E-9	200	228	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	2.8E-11	203	227	IPR005735	Zinc finger, LSD1-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009617	Biological Process	response to bacterium

Sequence ? help Back to Top
Protein Sequence Length: 254 aa Download sequence Send to blast
MAEEKENEGG EEEEDDDDDG PPPGFHFITP QAQKEIVKED KDEEEVEDGE GDDDEDSDGP 60 PPGWSSILPP SQQIQTSEMF GEQDDVEDDD GPPPGWDMPL PTSQLAEAIP SDMEMKCKQE 120 ETKAEDGAQP VEQSTPVSQS LPPTPPLPPS STPTLSASEK GQMICGTCRQ LLSYPRGAQY 180 VQCSSCQTVN LVLEAHQVGQ VKCGSCGVLL MYPYGAPSVK CSSCCFVTEI GDHNKRPPLS 240 VQQQQLRPPV NRVH

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027111779.1	2e-72	protein LOL2-like
TrEMBL	A0A068TTF7	3e-67	A0A068TTF7_COFCA; Uncharacterized protein
STRING	XP_009765270.1	1e-56	(Nicotiana sylvestris)