PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_6684_iso_5
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family DBB
Protein Properties Length: 195aa    MW: 21302.1 Da    PI: 4.5005
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_6684_iso_5genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box231.6e-071143436
                            zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg 36
                                        + C+ ++   ++ fC+ ++ +lC +C ++ H+ 
  cra_locus_6684_iso_5_len_754_ver_3 11 KPCDSCKTTSASVFCRADSAFLCMSCDSKVHEA 43
                                        67******99*******************9965 PP
2zf-B_box279.1e-095395339
                            zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                                         ++C+ +e+ +++  C+ +   lC++C   +H+       H++
  cra_locus_6684_iso_5_len_754_ver_3 53 VWVCEVCEQAPASVTCKADAAALCATCDRDIHSAnplarrHER 95
                                        689*****************************65777777876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.338855IPR000315B-box-type zinc finger
SMARTSM003363.9E-9855IPR000315B-box-type zinc finger
PfamPF006433.1E-61150IPR000315B-box-type zinc finger
CDDcd000214.55E-61255No hitNo description
PROSITE profilePS5011910.585198IPR000315B-box-type zinc finger
PfamPF006437.1E-75397IPR000315B-box-type zinc finger
CDDcd000214.33E-75498No hitNo description
SMARTSM003362.3E-105698IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MGGESWSLTA KPCDSCKTTS ASVFCRADSA FLCMSCDSKV HEANKLASRH ARVWVCEVCE  60
QAPASVTCKA DAAALCATCD RDIHSANPLA RRHERFPVIP FYDSATAAKC SGTSADDTKC  120
LLDEAEEAEA ASWLLPTPNC NKDNADPETP EYKTADYLFK DMDPYLDIDL ISSDDQKPHI  180
IXXXXIIIII IIITS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027061416.14e-97zinc finger protein CONSTANS-LIKE 4-like
SwissprotQ940T94e-58COL4_ARATH; Zinc finger protein CONSTANS-LIKE 4
TrEMBLA0A068V3I51e-95A0A068V3I5_COFCA; Uncharacterized protein
STRINGXP_009758697.11e-84(Nicotiana sylvestris)