PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_6705_iso_3
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family MYB
Protein Properties Length: 158aa    MW: 18744.9 Da    PI: 10.2044
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_6705_iso_3genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding521.7e-161360148
                                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                        +g WT+eEd +l+ +v+++G  +W+  ++  g+ R++k+c++rw +yl
  cra_locus_6705_iso_3_len_599_ver_3 13 KGTWTPEEDRKLIAYVTRYGCWNWRQLPKFAGLLRCGKSCRLRWMNYL 60
                                        799*****************99**********99************97 PP
2Myb_DNA-binding50.25.8e-1666106143
                                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHH CS
                     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksr 43 
                                         rg+ T+eEdel++++++ lG++ W+ Ia +++ gR+++++k++
  cra_locus_6705_iso_3_len_599_ver_3  66 RGNYTKEEDELIIKLHESLGNR-WSIIATHLP-GRSDNEIKNH 106
                                         899*******************.*********.*********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.227864IPR017930Myb domain
SuperFamilySSF466891.11E-2910106IPR009057Homeodomain-like
SMARTSM007171.5E-101262IPR001005SANT/Myb domain
PfamPF002492.1E-141360IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-231467IPR009057Homeodomain-like
CDDcd001677.97E-91560No hitNo description
PROSITE profilePS5129415.80565115IPR017930Myb domain
SMARTSM007171.7E-1265113IPR001005SANT/Myb domain
PfamPF002493.6E-1466106IPR001005SANT/Myb domain
CDDcd001671.03E-968106No hitNo description
Gene3DG3DSA:1.10.10.601.8E-2268106IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
XRTPCCDKSG MRKGTWTPEE DRKLIAYVTR YGCWNWRQLP KFAGLLRCGK SCRLRWMNYL  60
RPNLKRGNYT KEEDELIIKL HESLGNRWSI IATHLPGRSD NEIKNHXXXX XXXXXXXXXX  120
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXIIIIIN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-2613106799B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in cold stress response (PubMed:14675437, PubMed:20807373, PubMed:22246661). Regulates positively the expression of genes involved in reactive oxygen species (ROS) scavenging such as peroxidase and superoxide dismutase during cold stress. Transactivates a complex gene network that have major effects on stress tolerance and panicle development (PubMed:20807373). {ECO:0000269|PubMed:14675437, ECO:0000269|PubMed:20807373, ECO:0000269|PubMed:22246661}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold stress. {ECO:0000269|PubMed:14675437, ECO:0000269|PubMed:20807373, ECO:0000269|Ref.2}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027061165.11e-69transcription factor MYB4-like
RefseqXP_027170157.11e-69transcription factor MYB4-like
SwissprotQ7XBH47e-51MYB4_ORYSJ; Transcription factor MYB4
TrEMBLA0A343CX981e-70A0A343CX98_CATRO; Myb24686
STRINGGorai.005G206800.13e-64(Gossypium raimondii)
STRINGXP_010095861.14e-64(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Publications ? help Back to Top
  1. Park MR, et al.
    Supra-optimal expression of the cold-regulated OsMyb4 transcription factor in transgenic rice changes the complexity of transcriptional network with major effects on stress tolerance and panicle development.
    Plant Cell Environ., 2010. 33(12): p. 2209-30
    [PMID:20807373]
  2. Soltész A, et al.
    The rice Osmyb4 gene enhances tolerance to frost and improves germination under unfavourable conditions in transgenic barley plants.
    J. Appl. Genet., 2012. 53(2): p. 133-43
    [PMID:22246661]