PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_6720_iso_4

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

NAC

Protein Properties

Length: 246aa MW: 27503 Da PI: 6.1657

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_6720_iso_4	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	106.3	3.9e-33	47	133	50	128
NAM 50 kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk........kgelvglkktLvfykgrapkg 116 +k+++ ew+fF++rd+ky++g+r+nrat++gyWkatgkd++++s+ + +l+g+kktLvfy+grapkg cra_locus_6720_iso_4_len_869_ver_3 47 VIKTDDPEWFFFCPRDRKYPNGHRSNRATDAGYWKATGKDRTIKSRksspsgqsNPQLIGMKKTLVFYRGRAPKG 121 4667888************************************9666655544455************* PP NAM 117 ektdWvmheyrl 128 e+t+W+mheyr+ cra_locus_6720_iso_4_len_869_ver_3 122 ERTNWIMHEYRA 133 ********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	36.161	1	156	IPR003441	NAC domain
SuperFamily	SSF101941	1.27E-39	43	156	IPR003441	NAC domain
Pfam	PF02365	4.1E-17	51	132	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 246 aa Download sequence Send to blast
AEKKKGNVFL KWFSNGVQTA VXIFCYWNXV ACPAGTDTLL LLTGLSVIKT DDPEWFFFCP 60 RDRKYPNGHR SNRATDAGYW KATGKDRTIK SRKSSPSGQS NPQLIGMKKT LVFYRGRAPK 120 GERTNWIMHE YRATETDLDG TAPDQAAYVL CRLFHKPDEK TDNSKDDEAE HTGSSPTTVR 180 SSPDDTSSDL FQEQPILDME VGKQPEGMTR WLTDKSDEMT SNSHAHVESC MSDAEDHSTG 240 AAGTEV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-30	54	156	72	165	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-30	54	156	72	165	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-30	54	156	72	165	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-30	54	156	72	165	NO APICAL MERISTEM PROTEIN
3swm_A	2e-30	54	156	75	168	NAC domain-containing protein 19
3swm_B	2e-30	54	156	75	168	NAC domain-containing protein 19
3swm_C	2e-30	54	156	75	168	NAC domain-containing protein 19
3swm_D	2e-30	54	156	75	168	NAC domain-containing protein 19
3swp_A	2e-30	54	156	75	168	NAC domain-containing protein 19
3swp_B	2e-30	54	156	75	168	NAC domain-containing protein 19
3swp_C	2e-30	54	156	75	168	NAC domain-containing protein 19
3swp_D	2e-30	54	156	75	168	NAC domain-containing protein 19
4dul_A	2e-30	54	156	72	165	NAC domain-containing protein 19
4dul_B	2e-30	54	156	72	165	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (PubMed:18443413, PubMed:24329768). Calmodulin-regulated transcriptional repressor. Binds several synthetic promoters with randomly selected binding sites (PubMed:17947243). Functions synergistically with SNI1 as negative regulator of pathogen-induced PR1 expression and basal resistance to a virulent strain of P.syringae. Binds directly to the promoter of the PR1 gene (PubMed:22826500). Acts as positive regulator of innate immunity. Involved in the effector-triggered immunity (ETI) induction of immunity-related gene expression (PubMed:24329768). Mediates osmotic stress signaling in leaf senescence by up-regulating senescence-associated genes (PubMed:18443413). {ECO:0000269\|PubMed:17947243, ECO:0000269\|PubMed:18443413, ECO:0000269\|PubMed:22826500, ECO:0000269\|PubMed:24329768}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027081653.1	1e-107	protein NTM1-like 9 isoform X1
Refseq	XP_027081654.1	1e-107	protein NTM1-like 9 isoform X1
Refseq	XP_027181236.1	1e-107	protein NTM1-like 9
Swissprot	F4JN35	1e-74	NTL9_ARATH; Protein NTM1-like 9
TrEMBL	A0A068UVE1	1e-105	A0A068UVE1_COFCA; Uncharacterized protein
STRING	XP_008360722.1	1e-85	(Malus domestica)
STRING	XP_010056056.1	2e-86	(Eucalyptus grandis)

Publications ? help Back to Top
Zheng XY, et al. Spatial and temporal regulation of biosynthesis of the plant immune signal salicylic acid. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(30): p. 9166-73 [PMID:26139525] Guo T, et al. Lamin-like Proteins Negatively Regulate Plant Immunity through NAC WITH TRANSMEMBRANE MOTIF1-LIKE9 and NONEXPRESSOR OF PR GENES1 in Arabidopsis thaliana. Mol Plant, 2017. 10(10): p. 1334-1348 [PMID:28943325]