PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_6727_iso_5

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

TCP

Protein Properties

Length: 453aa MW: 47874.3 Da PI: 7.7889

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_6727_iso_5	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	124.8	9.3e-39	140	247	5	112
TCP 5 kdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaes 77 k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLl qa+ ai+++tgt++++a+++ ++s cra_locus_6727_iso_5_len_2050_ver_3 140 KKPSKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLHQAESAIIAATGTGTIPANFStLNVS 213 899***************************************************************99987777 PP TCP 78 ssssasnsssg.................kaaksaakskksqksaasalnlak 112 +ss+ + s++ l +++ cra_locus_6727_iso_5_len_2050_ver_3 214 LRSSGTTISAPpsksaplflhggsaaaaM------------------LGFHH 247 77777744444333334444433333330..................33333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	2.1E-37	143	275	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.598	143	197	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0001047	Molecular Function	core promoter binding

Sequence ? help Back to Top
Protein Sequence Length: 453 aa Download sequence Send to blast
MEFMEPHNKN QGGSSSSADH HHHHHQNLHH AHHQQQQQQN QNQNQEANIA SSLQLVSSLP 60 NQSQQQEQQS GSGGHGHGSS HTPSGHGPFM GSISIHSRNL LSSSSSSPSS NSTTTNPAST 120 STATAAANNN SAPSNTKVVK KPSKDRHTKV DGRGRRIRMP ALCAARVFQL TRELGHKSDG 180 ETIEWLLHQA ESAIIAATGT GTIPANFSTL NVSLRSSGTT ISAPPSKSAP LFLHGGSAAA 240 AMLGFHHQLT NSGFGQDPDD NFMKKRFRED GSGAASPSSS AKTPRTEVQD QEPGTEIKPG 300 SAQSSSGFIP AQAMWAVAPA AANVGNAFWM LPVTGGSAAA ATTTTGLNQQ EHQMWPYKAP 360 GMQRIAGYDF AGGGRFTPVQ LGSMVLQQQS QPVQQLGLGI TETTNMGMLA SINAYGGSTS 420 RVDLGMNLEQ HHHHQNQQPQ GSDSGDENPK DSQ

Sequence ? help Back to Top

Protein Sequence Length: 453 aa Download sequence Send to blast

MEFMEPHNKN QGGSSSSADH HHHHHQNLHH AHHQQQQQQN QNQNQEANIA SSLQLVSSLP  60
NQSQQQEQQS GSGGHGHGSS HTPSGHGPFM GSISIHSRNL LSSSSSSPSS NSTTTNPAST  120
STATAAANNN SAPSNTKVVK KPSKDRHTKV DGRGRRIRMP ALCAARVFQL TRELGHKSDG  180
ETIEWLLHQA ESAIIAATGT GTIPANFSTL NVSLRSSGTT ISAPPSKSAP LFLHGGSAAA  240
AMLGFHHQLT NSGFGQDPDD NFMKKRFRED GSGAASPSSS AKTPRTEVQD QEPGTEIKPG  300
SAQSSSGFIP AQAMWAVAPA AANVGNAFWM LPVTGGSAAA ATTTTGLNQQ EHQMWPYKAP  360
GMQRIAGYDF AGGGRFTPVQ LGSMVLQQQS QPVQQLGLGI TETTNMGMLA SINAYGGSTS  420
RVDLGMNLEQ HHHHQNQQPQ GSDSGDENPK DSQ

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027092108.1	1e-173	transcription factor TCP23-like
Refseq	XP_027094718.1	1e-173	transcription factor TCP23-like
Swissprot	Q9LQF0	2e-67	TCP23_ARATH; Transcription factor TCP23
TrEMBL	A0A068VGS0	1e-171	A0A068VGS0_COFCA; Uncharacterized protein
STRING	XP_009775051.1	1e-168	(Nicotiana sylvestris)