PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_6749_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family Trihelix
Protein Properties Length: 196aa    MW: 22053.1 Da    PI: 10.623
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_6749_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix81.41.3e-2544125173
                             trihelix   1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkik 65 
                                          rWt+qe+l+Li++++  e+r+rrg+         + +p+W++vs++++++g++r+p+qC+++w+nl++++kk  
  cra_locus_6749_iso_1_len_1267_ver_3  44 RWTRQEILVLIQGKKVAENRVRRGRtaglafgsaQVEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAGDFKKKS 117
                                          8**********************866677777779*************************************** PP

                             trihelix  66 egekkrts 73 
                                          eg+k+++ 
  cra_locus_6749_iso_1_len_1267_ver_3 118 EGKKRKRH 125
                                          **999744 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.444110IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.0E-544109IPR009057Homeodomain-like
PfamPF138374.0E-1144128No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050777Biological Processnegative regulation of immune response
GO:0071219Biological Processcellular response to molecule of bacterial origin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MAFEQLRLAP AAAVDDTSPA AAVNGRQLHL DVPDDAAKVP RLPRWTRQEI LVLIQGKKVA  60
ENRVRRGRTA GLAFGSAQVE PKWASVSSYC KRHGVNRGPV QCRKRWSNLA GDFKKKSEGK  120
KRKRHTVQVD EEDETRNLQD QLVEVLERNG TLLSSQLESQ NIHLQLEREQ RKDHVNSLIS  180
VLNKLADALG RIADKL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1102123RKRWSNLAGDFKKKSEGKKRKR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that binds DNA and plays a negative role in regulating microbe-associated molecular patterns-(MAMPs, e.g. flg22, elf18, chitin, and LPS) triggered immunity (PTI) by negatively regulating immune gene expression. {ECO:0000269|PubMed:25770109}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00288DAPTransfer from AT2G33550Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027100204.12e-55trihelix transcription factor ASR3 isoform X2
RefseqXP_027154551.12e-55trihelix transcription factor ASR3
SwissprotQ8VZ205e-50ASR3_ARATH; Trihelix transcription factor ASR3
TrEMBLA0A1Q3BVU83e-56A0A1Q3BVU8_CEPFO; Myb_DNA-bind_4 domain-containing protein
STRINGGorai.002G021600.13e-53(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA17862460
Publications ? help Back to Top
  1. Vidal EA, et al.
    Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots.
    BMC Genomics, 2013. 14: p. 701
    [PMID:24119003]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]