PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_6749_iso_6

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

Trihelix

Protein Properties

Length: 168aa MW: 18697 Da PI: 10.4643

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_6749_iso_6	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	90	2.5e-28	44	138	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkike 66 rWt+qe+l+Li++++ e+r+rrg+ + +p+W++vs++++++g++r+p+qC+++w+nl++++kkike cra_locus_6749_iso_6_len_802_ver_3 44 RWTRQEILVLIQGKKVAENRVRRGRtaglafgsaQVEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAGDFKKIKE 118 8********************866677777779************************************ PP trihelix 67 gekkrtsessstcpyfdqle 86 +e++ +++++s + + ++l+ cra_locus_6749_iso_6_len_802_ver_3 119 WESQMKEDTESFWLMRNDLR 138 **9999998898888875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.4	44	110	IPR017877	Myb-like domain
Pfam	PF13837	4.3E-13	44	134	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.7E-5	44	109	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0050777	Biological Process	negative regulation of immune response
GO:0071219	Biological Process	cellular response to molecule of bacterial origin
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0042803	Molecular Function	protein homodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 168 aa Download sequence Send to blast
MAFEQLRLAP AAAVDDTSPA AAVNGRQLHL DVPDDAAKVP RLPRWTRQEI LVLIQGKKVA 60 ENRVRRGRTA GLAFGSAQVE PKWASVSSYC KRHGVNRGPV QCRKRWSNLA GDFKKIKEWE 120 SQMKEDTESF WLMRNDLRRE RKLPGFFDRE VYDILDGGGG GGSGGGGX

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that binds DNA and plays a negative role in regulating microbe-associated molecular patterns-(MAMPs, e.g. flg22, elf18, chitin, and LPS) triggered immunity (PTI) by negatively regulating immune gene expression. {ECO:0000269\|PubMed:25770109}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00288	DAP	Transfer from AT2G33550	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027100202.1	4e-89	trihelix transcription factor ASR3 isoform X1
Refseq	XP_027100204.1	4e-89	trihelix transcription factor ASR3 isoform X2
Refseq	XP_027154551.1	4e-89	trihelix transcription factor ASR3
Swissprot	Q8VZ20	7e-80	ASR3_ARATH; Trihelix transcription factor ASR3
TrEMBL	A0A1Q3BVU8	2e-88	A0A1Q3BVU8_CEPFO; Myb_DNA-bind_4 domain-containing protein
STRING	evm.model.supercontig_2461.1	2e-84	(Carica papaya)

Publications ? help Back to Top
Vidal EA, et al. Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots. BMC Genomics, 2013. 14: p. 701 [PMID:24119003] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]