PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_6793_iso_10
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family DBB
Protein Properties Length: 292aa    MW: 31461.8 Da    PI: 4.375
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_6793_iso_10genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box201.5e-061757438
                              zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                                          r C+++ +   + +C+ ++ +lC  C + +H        H+
  cra_locus_6793_iso_10_len_1081_ver_3 17 RACDTCRSAACTVYCKADSAYLCSGCDSRIHAAnkvasrHE 57
                                          67******99*********************6556666665 PP
2zf-B_box31.92.8e-1058104242
                              zf-B_box   2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                                           + ++C+ +e+ ++ + C+ +   lC++C + +H+       H +vp+
  cra_locus_6793_iso_10_len_1081_ver_3  58 RVWICESCEKAPAAFLCKADAASLCATCDSDIHSAnplarrHHRVPI 104
                                           5689*****************************66899999877775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.211461IPR000315B-box-type zinc finger
SMARTSM003362.0E-81461IPR000315B-box-type zinc finger
CDDcd000219.23E-71761No hitNo description
PROSITE profilePS5011911.23457104IPR000315B-box-type zinc finger
PfamPF006431.8E-758104IPR000315B-box-type zinc finger
CDDcd000211.73E-860104No hitNo description
SMARTSM003363.6E-1062104IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009658Biological Processchloroplast organization
GO:0009909Biological Processregulation of flower development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048576Biological Processpositive regulation of short-day photoperiodism, flowering
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
GDLYTGGGGV RSNNWARACD TCRSAACTVY CKADSAYLCS GCDSRIHAAN KVASRHERVW  60
ICESCEKAPA AFLCKADAAS LCATCDSDIH SANPLARRHH RVPILPIPLT TGCLYGGGGG  120
GGPMIGHTAT ADEVEDDFNL TPVAAGEGGD DTTIDEDDEN EAASWLLLNP VKNYSSSNEH  180
NNGQGNNNNN IGGIFGGEGV DEYLDLVDYQ QEDNNQFGDH EYVVSDEKNR YGVGAAECVV  240
PSSRNGDGKE XXXXIIIIIF ISFRIIKVFN WDWIMRSLII LDMATLLQSL TP
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. Does not affect flowering time.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expressed with a circadian rhythm showing a peak at dawn.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009765376.19e-84PREDICTED: zinc finger protein CONSTANS-LIKE 2
RefseqXP_016462705.19e-84PREDICTED: zinc finger protein CONSTANS-LIKE 2-like
SwissprotQ965023e-64COL2_ARATH; Zinc finger protein CONSTANS-LIKE 2
TrEMBLA0A068U1F86e-83A0A068U1F8_COFCA; Uncharacterized protein
TrEMBLC0Z3T86e-83C0Z3T8_SOLTU; CONSTANS protein
STRINGXP_009765376.13e-83(Nicotiana sylvestris)
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Simon S,Rühl M,de Montaigu A,Wötzel S,Coupland G
    Evolution of CONSTANS Regulation and Function after Gene Duplication Produced a Photoperiodic Flowering Switch in the Brassicaceae.
    Mol. Biol. Evol., 2015. 32(9): p. 2284-301
    [PMID:25972346]