PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_68077_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family MIKC_MADS
Protein Properties Length: 166aa    MW: 19290.3 Da    PI: 6.0314
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_68077_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF48.41.2e-152322151
                                         HHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                               SRF-TF 21 lKKAeELSvLCdaevaviifsstgklyeyss 51
                                         lKKA+E+SvLCda+v +i+fs++gkl+ey++
  cra_locus_68077_iso_1_len_495_ver_3  2 LKKAHEISVLCDADVGLIVFSTKGKLFEYAT 32
                                         8****************************86 PP
2K-box951.2e-31501473100
                                K-box   3 kssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleq 76 
                                          +s+ ++ + +   s++ ++akLk ++e Lqr+qRh++GedL+sL lkeLq+Le+qL++slk+i s++n+l++e 
  cra_locus_68077_iso_1_len_495_ver_3  50 ESQLTAPHPESLGSWTLKHAKLKTRMEVLQRNQRHYMGEDLDSLCLKELQNLERQLDSSLKNIGSRQNQLMHEA 123
                                          56666666677889************************************************************ PP

                                K-box  77 ieelqkkekelqeenkaLrkklee 100
                                          i elqkk k+lqe+n+ L k+++e
  cra_locus_68077_iso_1_len_495_ver_3 124 IAELQKKDKALQEQNNLLAKEIKE 147
                                          ********************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006615.572134IPR002100Transcription factor, MADS-box
PfamPF003193.4E-11230IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.19E-17264IPR002100Transcription factor, MADS-box
SMARTSM004322.7E-4233IPR002100Transcription factor, MADS-box
PROSITE profilePS5129715.41761151IPR002487Transcription factor, K-box
PfamPF014869.1E-2663145IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
XLKKAHEISV LCDADVGLIV FSTKGKLFEY ATDSCMERIL ERYETSSYSE SQLTAPHPES  60
LGSWTLKHAK LKTRMEVLQR NQRHYMGEDL DSLCLKELQN LERQLDSSLK NIGSRQNQLM  120
HEAIAELQKK DKALQEQNNL LAKEIKEKEQ ELVRTSTPWQ EQNYDX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A7e-1548141197Developmental protein SEPALLATA 3
4ox0_B7e-1548141197Developmental protein SEPALLATA 3
4ox0_C7e-1548141197Developmental protein SEPALLATA 3
4ox0_D7e-1548141197Developmental protein SEPALLATA 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001311552.14e-86agamous-like MADS-box protein AGL8 homolog
SwissprotQ6E6S78e-79AP1_VITVI; Agamous-like MADS-box protein AP1
TrEMBLA0A1U8EMC29e-85A0A1U8EMC2_CAPAN; agamous-like MADS-box protein AGL8 homolog
TrEMBLQ9SEG79e-85Q9SEG7_CAPAN; Agamous-like MADS-box protein AGL8-like protein
STRINGXP_009792071.11e-83(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4992397
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]