PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_68285_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

Trihelix

Protein Properties

Length: 129aa MW: 14829.3 Da PI: 4.9005

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_68285_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	32.8	1.8e-10	6	74	21	86
trihelix 21 lrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkr..tsessstcpyfdqle 86 l+r++l+ +W ev++k+ g+ +s ++C++ ++ l+++ykk+ + +k ++ +s++p+f++++ cra_locus_68285_iso_1_len_383_ver_3 6 LGRRSLRSEDWGEVAEKVtDMIGVDKSEIECRNQLDVLKNKYKKEITKLEKTggGAGFHSKWPFFKKMD 74 6788999*********6678******************9887776534588999******8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.7E-12	4	76	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 129 aa Download sequence Send to blast
XRYLELGRRS LRSEDWGEVA EKVTDMIGVD KSEIECRNQL DVLKNKYKKE ITKLEKTGGG 60 AGFHSKWPFF KKMDMLMNLR MKGHCGLGCG LDSGEYVFMD PRMYLDRSNV LDEMRDSPAG 120 SDADEEEEX

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016488769.1	2e-74	PREDICTED: trihelix transcription factor ASIL2-like isoform X3
TrEMBL	A0A2G2WS77	2e-73	A0A2G2WS77_CAPBA; Uncharacterized protein
STRING	XP_009590626.1	1e-73	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12060	20	22