PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_6851_iso_3
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family FAR1
Protein Properties Length: 102aa    MW: 11553.4 Da    PI: 9.3507
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_6851_iso_3genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR122.53.8e-075356090
                                FAR1 60 tgCkaklkvkkekdgkwevtkleleHnHela 90
                                         gC+a++ ++ +k+gk  v+++  +HnH+l+
  cra_locus_6851_iso_3_len_876_ver_3  5 AGCQAMILLSCDKSGKCIVSRFLRDHNHPLV 35
                                        79***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.6E-4535IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 102 aa     Download sequence    Send to blast
PRSGAGCQAM ILLSCDKSGK CIVSRFLRDH NHPLVTFPTE VGYTMDVKDR KIQELKMELQ  60
NKRKLCGFYR EQLAAVVKVV EEHTKEISRK HDLAVNNLQG VG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027164403.11e-32protein FAR1-RELATED SEQUENCE 12-like isoform X3
TrEMBLA0A061ERC23e-31A0A061ERC2_THECC; Far-red impaired responsive (FAR1) family protein
TrEMBLA0A068V9223e-31A0A068V922_COFCA; Uncharacterized protein
STRINGEOY048694e-32(Theobroma cacao)