PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_68728_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

C2H2

Protein Properties

Length: 75aa MW: 8152.18 Da PI: 6.0715

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_68728_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.2	0.00054	44	67	2	23
EETTTTEEESSHHHHHHHHHH..T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt..H 23 +C++Cgk++++k + H ++ H cra_locus_68728_iso_1_len_332_ver_3 44 VCSICGKPCRSKTESDLHTKRtgH 67 8***********998888887555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE pattern	PS00028	0	8	30	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	45	67	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 75 aa Download sequence Send to blast
MTGLSLQCGD CGTLLKSVEE AQEHAELTKH ANFVESTEAV LNLVCSICGK PCRSKTESDL 60 HTKRTGHTEF VDKTS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011073802.1	5e-44	chromatin assembly factor 1 subunit A
TrEMBL	A0A4D8Y8W0	6e-42	A0A4D8Y8W0_SALSN; Uncharacterized protein
TrEMBL	A0A4D9C3W0	1e-41	A0A4D9C3W0_SALSN; Uncharacterized protein
STRING	evm.model.supercontig_443.2	2e-41	(Carica papaya)
STRING	EMJ24047	5e-41	(Prunus persica)