PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_68951_iso_2

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

MIKC_MADS

Protein Properties

Length: 179aa MW: 20895.5 Da PI: 6.514

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_68951_iso_2	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	35.1	1.7e-11	1	27	25	51
HHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 25 eELSvLCdaevaviifsstgklyeyss 51 +E+ vLCda+v++ii++s+gk++ey+s cra_locus_68951_iso_2_len_536_ver_3 1 KEITVLCDAKVSLIIYGSSGKMHEYCS 27 69***********************96 PP
2	K-box	81	2.9e-27	39	137	1	99
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnelll 74 yqk+sg++l++ak+e+l++e++++kke++++q ++Rhl+Ged++sL++keL+ +e++L+++l++i +k++e+l+ cra_locus_68951_iso_2_len_536_ver_3 39 YQKTSGRRLWDAKHENLSNEIDRIKKENDSMQVKLRHLKGEDINSLNHKELMVMEEALQNGLSSISAKQSEILR 112 8999******************************************************************** PP K-box 75 eqieelqkkekelqeenkaLrkkle 99 + ++ q e+e+++ + aL++k + cra_locus_68951_iso_2_len_536_ver_3 113 MVRKNDQILEEEHKQLQYALHQKEM 137 ********************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF55455	3.27E-16	1	64	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	12.769	1	29	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.3E-5	2	25	IPR002100	Transcription factor, MADS-box
Pfam	PF01486	1.7E-16	50	131	IPR002487	Transcription factor, K-box
PROSITE profile	PS51297	13.808	52	138	IPR002487	Transcription factor, K-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 179 aa Download sequence Send to blast
KEITVLCDAK VSLIIYGSSG KMHEYCSPST TISDMLDGYQ KTSGRRLWDA KHENLSNEID 60 RIKKENDSMQ VKLRHLKGED INSLNHKELM VMEEALQNGL SSISAKQSEI LRMVRKNDQI 120 LEEEHKQLQY ALHQKEMAAM GGNMRVIQEE VYHQRERDYE YQMPFALRVQ PMQPNLHEX

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the genetic control of flower development.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019258175.1	1e-129	PREDICTED: floral homeotic protein PMADS 2
Swissprot	Q07474	1e-121	MADS2_PETHY; Floral homeotic protein PMADS 2
TrEMBL	A0A314LGA0	1e-127	A0A314LGA0_NICAT; Floral homeotic protein globosa
STRING	XP_009608638.1	1e-128	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4680	21	39

Publications ? help Back to Top
Immink RG, et al. Analysis of the petunia MADS-box transcription factor family. Mol. Genet. Genomics, 2003. 268(5): p. 598-606 [PMID:12589434] Kush A,Brunelle A,Shevell D,Chua NH The cDNA sequence of two MADS box proteins in Petunia. Plant Physiol., 1993. 102(3): p. 1051-2 [PMID:8278527]