PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_69016_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

bHLH

Protein Properties

Length: 204aa MW: 22898.2 Da PI: 8.2409

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_69016_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37	5.9e-12	58	105	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR+ri +++ L++l+P + +k Ka++L + ++YI+sLq cra_locus_69016_iso_1_len_610_ver_3 58 SHSLAERARRERISERMKILQDLVPGC----NKVIGKAMVLDEIINYIQSLQ 105 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	3.53E-18	52	123	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.75E-10	52	109	No hit	No description
PROSITE profile	PS50888	15.929	54	104	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.7E-18	54	122	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.3E-9	58	105	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.0E-11	60	110	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 204 aa Download sequence Send to blast
GEDAVSVIPL TTSPPVMQLL ITTXXXXXXX XXXXEKQKPE PPKDYIHVRA RRGQATDSHS 60 LAERARRERI SERMKILQDL VPGCNKVIGK AMVLDEIINY IQSLQGQVEF LSMKLEAVNS 120 RMNPSIEGFP SKDLAVRTFE ANQMIFGFQA PKESSQGTEW LHMQIGTALE RAXIIEMNPA 180 VKPSTVKLDL LVQQHGAVFT CTRX

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that forms a ternary complex with RSS3 and TIFY11A/JAZ9 to negatively regulate jasmonate-responsive genes. {ECO:0000269\|PubMed:23715469}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016563548.1	3e-78	PREDICTED: transcription factor bHLH79
Swissprot	Q69WS3	5e-64	BH094_ORYSJ; Transcription factor BHLH094
TrEMBL	A0A2G9G1L8	3e-77	A0A2G9G1L8_9LAMI; Uncharacterized protein
STRING	XP_009631983.1	7e-76	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1287	24	71