PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_6928_iso_2

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

FAR1

Protein Properties

Length: 254aa MW: 29707.4 Da PI: 5.9541

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_6928_iso_2	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	83.9	2.5e-26	78	168	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerr.traetrtgCkaklkvkkekd 73 +fY +Y++++GF+vr++++++s+ n+ +++++fvCskeg+re++ +++++ + ++tr gC a+l+v +++ cra_locus_6928_iso_2_len_1194_ver_3 78 EFYIAYGRRTGFTVRIHHNRRSRVNNMVISQDFVCSKEGFREKKYVQRKDRVLpSPPVTREGCPAMLRVALRDG 151 6****************************************988833333347899************ PP FAR1 74 gkwevtkleleHnHela 90 kw vtk++++HnH+l cra_locus_6928_iso_2_len_1194_ver_3 152 VKWIVTKFVKDHNHSLL 168 ************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.8E-23	78	168	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 254 aa Download sequence Send to blast
MENSLSKVFD SDESRSYLHI EKKDDDSFLE DELSTSMDFC IVEDDNCMEK LSENIPSSEN 60 ATEPQIGMEF SSKDDAREFY IAYGRRTGFT VRIHHNRRSR VNNMVISQDF VCSKEGFREK 120 KYVQRKDRVL PSPPVTREGC PAMLRVALRD GVKWIVTKFV KDHNHSLLSP GKVPWRGSGR 180 NVVSEDEKDQ RIRELTLELY NERQRCKRKC AAYEEKLQSL LKFIEDHTQH LSRTVEEIVE 240 LVKEIENKQV EDPN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	202	207	RQRCKR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027092392.1	1e-138	protein FAR1-RELATED SEQUENCE 3-like
Refseq	XP_027092402.1	1e-138	protein FAR1-RELATED SEQUENCE 3-like
Refseq	XP_027178367.1	1e-138	protein FAR1-RELATED SEQUENCE 3-like
TrEMBL	A0A068U6N1	1e-137	A0A068U6N1_COFCA; Uncharacterized protein
STRING	XP_009620541.1	1e-128	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA14445	9	10