PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_69318_iso_2

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

bZIP

Protein Properties

Length: 109aa MW: 12276.1 Da PI: 5.3388

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_69318_iso_2	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	30.4	8.3e-10	71	108	4	41
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeae 41 +k+ +r +NR AA +sR+RKk ++ Le k+ +e+e cra_locus_69318_iso_2_len_325_ver_3 71 DKKRKRQLRNRDAAVKSRERKKLYVRDLESKSRYFESE 108 899****************************9999887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	2.5E-9	64	108	No hit	No description
PROSITE profile	PS50217	9.427	70	109	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	5.0E-8	71	108	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	4.43E-8	72	108	No hit	No description
CDD	cd14704	7.38E-11	73	108	No hit	No description
PROSITE pattern	PS00036	0	75	90	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 109 aa Download sequence Send to blast
RPGIVYSEEA DPQFASEFLS DLLVDSPVQY PSGGLSDSKV SSGSEGNDDR KDKGKVSKSP 60 SDGEDNDDPV DKKRKRQLRN RDAAVKSRER KKLYVRDLES KSRYFESEX

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	72	91	KRKRQLRNRDAAVKSRERKK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006342192.1	1e-37	PREDICTED: bZIP transcription factor 60
TrEMBL	B2CM16	2e-36	B2CM16_SOLCH; BZIP transcription factor protein
STRING	PGSC0003DMT400025921	5e-37	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7101	21	28