PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_6959_iso_6

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

G2-like

Protein Properties

Length: 50aa MW: 5553.14 Da PI: 7.3616

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_6959_iso_6	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	44.1	4.7e-14	22	46	1	25
G2-like 1 kprlrWtpeLHerFveaveqLGGse 25 k+rlrWt+eLHerFv+av+qLGG++ cra_locus_6959_iso_6_len_1392_ver_3 22 KQRLRWTNELHERFVDAVAQLGGPD 46 79*********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	9.0E-12	21	47	IPR009057	Homeodomain-like
SuperFamily	SSF46689	9.68E-6	21	46	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	7.5E-10	22	47	IPR006447	Myb domain, plants

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 50 aa Download sequence Send to blast
MDFMGGGNNN MNNSNNSNLA SKQRLRWTNE LHERFVDAVA QLGGPDSKCL

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00252	DAP	Transfer from AT2G01060	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020554068.1	7e-17	uncharacterized protein LOC105175200
TrEMBL	M1ABL6	2e-17	M1ABL6_SOLTU; Uncharacterized protein
STRING	XP_008351138.1	5e-15	(Malus domestica)
STRING	XP_010059710.1	7e-15	(Eucalyptus grandis)