PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_7006_iso_1
Common Namezct1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family C2H2
Protein Properties Length: 152aa    MW: 16665.4 Da    PI: 9.6957
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_7006_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.50.000916385123
                                        EEETTTTEEESSHHHHHHHHHHT CS
                             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                        + C++Cg  F+    L  H+r+H
  cra_locus_7006_iso_1_len_947_ver_3 63 HACSICGLEFPLGQALGGHMRRH 85
                                        67********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.22E-91685No hitNo description
SMARTSM003550.911840IPR015880Zinc finger, C2H2-like
PfamPF139121.1E-101842IPR007087Zinc finger, C2H2
PROSITE profilePS501579.5151845IPR007087Zinc finger, C2H2
PROSITE patternPS0002802040IPR007087Zinc finger, C2H2
PfamPF139128.5E-106287IPR007087Zinc finger, C2H2
PROSITE profilePS501579.2036390IPR007087Zinc finger, C2H2
SMARTSM003550.316385IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806585IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MEKSAVPALK PGAGGRIYEC KTCKKQFLTF QALGGHRASH KKLRLMAADL LHQSLAVTKP  60
KTHACSICGL EFPLGQALGG HMRRHRGAAL DGEKPVVVSD KPVAKAVPFL MRSNSSKRIF  120
GFEVDGLDLN LTPEDNDPDE RDKFPPLLEF FV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:18201973}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027063234.15e-45zinc finger protein ZAT8-like
SwissprotQ9LX855e-29ZAT8_ARATH; Zinc finger protein ZAT8
TrEMBLQ5TJD61e-107Q5TJD6_CATRO; Zinc finger DNA-binding protein
STRINGXP_006480743.13e-37(Citrus sinensis)
STRINGPOPTR_0010s21650.13e-37(Populus trichocarpa)
STRINGXP_002533000.15e-37(Ricinus communis)
STRINGXP_006429010.13e-37(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36624150
Publications ? help Back to Top
  1. Pauw B, et al.
    Zinc finger proteins act as transcriptional repressors of alkaloid biosynthesis genes in Catharanthus roseus.
    J. Biol. Chem., 2004. 279(51): p. 52940-8
    [PMID:15465826]