PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_70426_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

HB-other

Protein Properties

Length: 96aa MW: 10813.1 Da PI: 10.2005

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_70426_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	15	4.2e-05	32	87	1	52
TT--SS--HHHHHHHHHHHH....HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFe....knrypsaeereeLAkklgLterqVkvWFqNrR 52 +r Rt+ft+eq e + el e + ++ ++e e+L +++g+ + kvW +N + cra_locus_70426_iso_1_len_431_ver_3 32 KRFRTKFTQEQKEKMVELAErvgwRIQKQDEEIVEQLCNEIGIRRHVLKVWMHNNK 87 789**********99999776678999***********************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.41E-21	17	90	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.7E-32	19	90	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	6.9E-27	31	87	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 96 aa Download sequence Send to blast
XSGGGGSRDI IMEQEDMNSG GGGGVGGMSS KKRFRTKFTQ EQKEKMVELA ERVGWRIQKQ 60 DEEIVEQLCN EIGIRRHVLK VWMHNNKHTL GLGKKP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	5e-26	30	89	16	75	ZF-HD homeobox family protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.
UniProt	Putative transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007158386.1	9e-38	hypothetical protein PHAVU_002G148900g
Refseq	XP_014520131.1	1e-37	zinc-finger homeodomain protein 1-like
Refseq	XP_017417478.1	1e-37	PREDICTED: zinc-finger homeodomain protein 1-like
Refseq	XP_027913173.1	1e-37	zinc-finger homeodomain protein 1-like
Swissprot	A2Z259	1e-31	ZHD1_ORYSI; Zinc-finger homeodomain protein 1
Swissprot	Q6YXH5	1e-31	ZHD1_ORYSJ; Zinc-finger homeodomain protein 1
TrEMBL	A0A0L9UB56	3e-36	A0A0L9UB56_PHAAN; Uncharacterized protein
TrEMBL	A0A0S3T336	3e-36	A0A0S3T336_PHAAN; Uncharacterized protein
TrEMBL	A0A1S3VP22	3e-36	A0A1S3VP22_VIGRR; zinc-finger homeodomain protein 1-like
TrEMBL	A0A4D6LP39	3e-36	A0A4D6LP39_VIGUN; Uncharacterized protein
TrEMBL	V7CM97	2e-36	V7CM97_PHAVU; Uncharacterized protein
STRING	evm.TU.contig_48208.1	9e-38	(Carica papaya)
STRING	XP_007158386.1	4e-37	(Phaseolus vulgaris)

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]