PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_7048_iso_3
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family B3
Protein Properties Length: 465aa    MW: 52147.9 Da    PI: 7.4152
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_7048_iso_3genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3100.11.3e-31141245199
                                          EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHH CS
                                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvk 70 
                                          f+kv tpsdv+k++rlv+pk++ae++    ++ +e++  l +ed++g+ W+++++y+++s++yv+tkGW++Fvk
  cra_locus_7048_iso_3_len_2499_ver_3 141 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSSTNEKGLLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVK 214
                                          89***************************966778999************************************ PP

                                          HHT--TT-EEEEEE-.SS.SEE..EEEEE-S CS
                                   B3  71 angLkegDfvvFkld.gr.sefelvvkvfrk 99 
                                          +++L++gD+v F++  g+  + +l++ ++r+
  cra_locus_7048_iso_3_len_2499_ver_3 215 EKKLDAGDIVSFQRGvGElGKDRLFIDWRRR 245
                                          *************666999999999999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.3E-42132249IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.09E-29138246IPR015300DNA-binding pseudobarrel domain
CDDcd100173.28E-26139228No hitNo description
SMARTSM010191.4E-22141246IPR003340B3 DNA binding domain
PfamPF023623.7E-29141245IPR003340B3 DNA binding domain
PROSITE profilePS5086314.649141246IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009908Biological Processflower development
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MNFMPNRAGF CEDDPRSVRP FSQSSSTSSS SSSLQQQQQQ QKGVVVPLSY NQHHQQYHLQ  60
QQQSRWGWDE TIAFRYSSGE GVSQLDLMRD SSSPAHVNNV DDTADDSEEH LLMRPQGGGG  120
DHSIEGTAAS VSMTIEREHM FDKVVTPSDV GKLNRLVIPK QHAEKYFPLD SSTNEKGLLL  180
NFEDRNGKPW RFRYSYWNSS QSYVMTKGWS RFVKEKKLDA GDIVSFQRGV GELGKDRLFI  240
DWRRRPDAPL DHHRHHHLPP PPIPSLSLPH HFSFHPWNHP YYLQQQQQQP RDSSHQAFLQ  300
SHLKSYGTNY YSSSSGVMNG NPCPGSVLYL RSAPTSAAAS PQQVGVGMVQ LQRGSNRNNV  360
GVEEAMVFES VPVVQGKAAA KRLRLFGVNM ECPIPESDDQ CDNILSSTAV PHSMMPQQAS  420
HTHFSSSSSI SPLQLRPYSG TPVLQTLPSD LQNKGKSSMS LDFDV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A4e-661362463114B3 domain-containing transcription factor NGA1
5os9_B4e-661362463114B3 domain-containing transcription factor NGA1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRegulates lateral organ growth. Functionally redundant with NGA2, NGA3 and NGA4. {ECO:0000269|PubMed:16603651}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027082046.11e-141B3 domain-containing protein Os03g0120900-like
RefseqXP_027082047.11e-141B3 domain-containing protein Os03g0120900-like
RefseqXP_027082049.11e-141B3 domain-containing protein Os03g0120900-like
RefseqXP_027082050.11e-141B3 domain-containing protein Os03g0120900-like
RefseqXP_027082051.11e-141B3 domain-containing protein Os03g0120900-like
RefseqXP_027082052.11e-141B3 domain-containing protein Os03g0120900-like
RefseqXP_027183229.11e-141B3 domain-containing protein Os03g0120900-like
RefseqXP_027183230.11e-141B3 domain-containing protein Os03g0120900-like
SwissprotO827993e-75NGA1_ARATH; B3 domain-containing transcription factor NGA1
TrEMBLA0A068UVI61e-128A0A068UVI6_COFCA; Uncharacterized protein
STRINGXP_009758550.11e-120(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28172350
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Lee BH, et al.
    The Arabidopsis thaliana NGATHA transcription factors negatively regulate cell proliferation of lateral organs.
    Plant Mol. Biol., 2015. 89(4-5): p. 529-38
    [PMID:26433582]
  3. Lozano-Sotomayor P, et al.
    Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana.
    Plant J., 2016. 88(3): p. 437-451
    [PMID:27402171]
  4. Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
    Active suppression of a leaf meristem orchestrates determinate leaf growth.
    Elife, 2017.
    [PMID:27710768]
  5. Sasnauskas G,Manakova E,Lapėnas K,Kauneckaitė K,Siksnys V
    DNA recognition by Arabidopsis transcription factors ABI3 and NGA1.
    FEBS J., 2018. 285(21): p. 4041-4059
    [PMID:30183137]
  6. Sato H, et al.
    Arabidopsis thaliana NGATHA1 transcription factor induces ABA biosynthesis by activating NCED3 gene during dehydration stress.
    Proc. Natl. Acad. Sci. U.S.A., 2018. 115(47): p. E11178-E11187
    [PMID:30397148]