PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_70852_iso_2
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family MIKC_MADS
Protein Properties Length: 108aa    MW: 12407.4 Da    PI: 4.5313
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_70852_iso_2genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF22.91.1e-072242951
                                         HHHT-EEEEEEE-TTSEEEEEE- CS
                               SRF-TF 29 vLCdaevaviifsstgklyeyss 51
                                         +LCd++va ++fss+g+l+e+s+
  cra_locus_70852_iso_2_len_321_ver_3  2 ILCDVDVAALVFSSRGRLFEFSN 24
                                         8********************95 PP
2K-box263.8e-1045107971
                                K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKne 71 
                                          ++++ + + + ++a      e Lq+  ++l   d+++L + +L +Le+q+e++l++ R +K++
  cra_locus_70852_iso_2_len_321_ver_3  45 VSAEVNDTEESKYASFMPMEELLQTVEKKLEEPDVDDLCITDLVHLENQVETALTQTRFRKTH 107
                                          4555555666778888888899**999**********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006610.246126IPR002100Transcription factor, MADS-box
PfamPF003192.0E-5222IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.11E-8243IPR002100Transcription factor, MADS-box
PROSITE profilePS512977.34950108IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 108 aa     Download sequence    Send to blast
XILCDVDVAA LVFSSRGRLF EFSNTDSPTG IIHRYHNHMK AEDKVSAEVN DTEESKYASF  60
MPMEELLQTV EKKLEEPDVD DLCITDLVHL ENQVETALTQ TRFRKTHX
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010321013.12e-63agamous-like MADS-box protein AGL27
RefseqXP_010321014.12e-63agamous-like MADS-box protein AGL27
TrEMBLA0A0V0HZX38e-62A0A0V0HZX3_SOLCH; Putative agamous-like MADS-box protein AGL27-like
STRINGXP_009790268.11e-58(Nicotiana sylvestris)