PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_7165_iso_2

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

CAMTA

Protein Properties

Length: 162aa MW: 18963.6 Da PI: 9.7039

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_7165_iso_2	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	165.5	8.7e-52	47	159	3	114
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvg 76 +e k+rwl+++ei+aiL n++ ++++ ++ + p sg+++L++rk++r+frkDG++wkkkkdgktv+E+he+LKvg cra_locus_7165_iso_2_len_729_ver_3 47 EEaKARWLRPNEIHAILYNYKYFNVQVKPVNLPASGTMVLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVG 121 45599******************************************************************** PP CG-1 77 gvevlycyYahseenptfqrrcywlLeeelekivlvhy 114 + e +++yYah+e+nptf rrcywlL+++le+ivlv y cra_locus_7165_iso_2_len_729_ver_3 122 NEERIHVYYAHGEDNPTFVRRCYWLLDKSLEHIVLVPY 159 **********************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	71.465	42	162	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	4.1E-70	45	162	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	3.9E-46	48	160	IPR005559	CG-1 DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 162 aa Download sequence Send to blast
LKXSVGDSSR VEKEFISMDN IIAGRLVGTE IHGFRTMGDL DMANILEEAK ARWLRPNEIH 60 AILYNYKYFN VQVKPVNLPA SGTMVLFDRK MLRNFRKDGH NWKKKKDGKT VKEAHEHLKV 120 GNEERIHVYY AHGEDNPTFV RRCYWLLDKS LEHIVLVPYF LS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:14581622, ECO:0000269\|PubMed:28351986, ECO:0000305\|PubMed:11925432}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00435	DAP	Transfer from AT4G16150	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269\|PubMed:12218065}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021898630.1	2e-81	calmodulin-binding transcription activator 5
Swissprot	O23463	4e-69	CMTA5_ARATH; Calmodulin-binding transcription activator 5
TrEMBL	A0A151RXL8	1e-77	A0A151RXL8_CAJCA; Calmodulin-binding transcription activator 6
STRING	evm.model.supercontig_929.1	4e-81	(Carica papaya)

Publications ? help Back to Top
Ye J, et al. Arabidopsis formin3 directs the formation of actin cables and polarized growth in pollen tubes. Plant Cell, 2009. 21(12): p. 3868-84 [PMID:20023198] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986] Lan Y,Liu X,Fu Y,Huang S Arabidopsis class I formins control membrane-originated actin polymerization at pollen tube tips. PLoS Genet., 2018. 14(11): p. e1007789 [PMID:30418966]