PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_7205_iso_2
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family MYB_related
Protein Properties Length: 282aa    MW: 31138.1 Da    PI: 4.6666
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_7205_iso_2genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.91.5e-151470148
                                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.........TTS-HHHHHHHHHHHT CS
                      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.........kgRtlkqcksrwqkyl 48
                                         +g+WT+eEd  lv +v+++G+g+W++++   g           Rt++++k++w+++l
  cra_locus_7205_iso_2_len_1351_ver_3 14 KGPWTPEEDIMLVSYVQEYGPGNWRAVPTNTGledaiasylPERTDNDIKNYWNTHL 70
                                         79************************9999999999999999************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.94E-16876IPR009057Homeodomain-like
PROSITE profilePS5129421.274974IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.1E-221375IPR009057Homeodomain-like
SMARTSM007171.2E-131372IPR001005SANT/Myb domain
PfamPF002491.2E-81443IPR001005SANT/Myb domain
CDDcd001678.13E-151670No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0080167Biological Processresponse to karrikin
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MGRPPCCDKV GVKKGPWTPE EDIMLVSYVQ EYGPGNWRAV PTNTGLEDAI ASYLPERTDN  60
DIKNYWNTHL KKKLKMLQTG PDPCSRNGFS SSQSASKGQW ERRLQADIKT AKQALQDALT  120
LDGTSSPVPD SKGLFSLAET GGQASNNSNT YASSTENIAR LLKDWARNSS NSKSKKQSKS  180
SSTQHSFNYP ANEYSTSSSV ESKNGIELSE AFESLFGFES FDSSNSEFSQ STSPEASLFQ  240
GESKPEITQV PLAMLENWLF DESSIQGKDL TNFSFDHDED LF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16975LKKKLKM
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00395DAPTransfer from AT3G47600Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028109092.11e-104myb-related protein 306-like
SwissprotP813923e-74MYB06_ANTMA; Myb-related protein 306
TrEMBLA0A2N9FVI21e-102A0A2N9FVI2_FAGSY; Uncharacterized protein
STRINGVIT_14s0108g00830.t014e-96(Vitis vinifera)
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]