PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_7205_iso_3
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family MYB_related
Protein Properties Length: 250aa    MW: 27686 Da    PI: 5.157
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_7205_iso_3genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.66.9e-0912382048
                                         TTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                      Myb_DNA-binding 20 GggtWktIartmgkgRtlkqcksrwqkyl 48
                                          ++ W++Ia++++  Rt++++k++w+++l
  cra_locus_7205_iso_3_len_1000_ver_3 12 KKK-WAAIASYLP-ERTDNDIKNYWNTHL 38
                                         566.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.447142IPR017930Myb domain
SuperFamilySSF466891.48E-8744IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-121039IPR009057Homeodomain-like
PfamPF002492.5E-71138IPR001005SANT/Myb domain
CDDcd001677.65E-71238No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0080167Biological Processresponse to karrikin
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
XGLFLQIQGS FKKKWAAIAS YLPERTDNDI KNYWNTHLKK KLKMLQTGPD PCSRNGFSSS  60
QSASKGQWER RLQADIKTAK QALQDALTLD GTSSPVPDSK GLFSLAETGG QASNNSNTYA  120
SSTENIARLL KDWARNSSNS KSKKQSKSSS TQHSFNYPAN EYSTSSSVES KNGIELSEAF  180
ESLFGFESFD SSNSEFSQST SPEASLFQGE SKPEITQVPL AMLENWLFDE SSIQGKDLTN  240
FSFDHDEDLF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13743LKKKLKM
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00395DAPTransfer from AT3G47600Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028109092.19e-79myb-related protein 306-like
SwissprotP813922e-48MYB06_ANTMA; Myb-related protein 306
TrEMBLA0A2N9FVI22e-76A0A2N9FVI2_FAGSY; Uncharacterized protein
STRINGVIT_14s0108g00830.t014e-69(Vitis vinifera)
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]