PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_7256_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family NF-YA
Protein Properties Length: 366aa    MW: 41328.5 Da    PI: 9.5279
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_7256_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA101.96e-32176232158
                            CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                                          dep+YVNaKQy++Il+RRq Rakle+++kl +k+rkpylheSRh+hA++R+RgsgGrF
  cra_locus_7256_iso_1_len_1095_ver_3 176 DEPIYVNAKQYKAILRRRQFRAKLEAQNKL-SKARKPYLHESRHRHAINRARGSGGRF 232
                                          79****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005212.1E-36174235IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.27175235IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.7E-27177232IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006168.2E-23178200IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860180200IPR018362CCAAT-binding factor, conserved site
PRINTSPR006168.2E-23209232IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
XESDAQESTL SRNLSNKMMN PSEHCQTSKQ LGVYFQDQDS SSTQSTGQSY CEVVNIETKG  60
YGKDTLLAGS CITNIKASEN QSKSAISYQD HDLPHSPIHY RQLACFPLPY PDPGIQFAET  120
VYELSTYYIX HTSSRGCWRE SPLDAPMRYF PFKFVQVHSQ MVGTRVPLPL DHPPHDEPIY  180
VNAKQYKAIL RRRQFRAKLE AQNKLSKARK PYLHESRHRH AINRARGSGG RFLNTKKSPE  240
SKLPSSSNAN NDQDISDSMQ LHLNTKSMVL TSSEITSSSI IDEASFSRPR EYYRFSGGSL  300
AAAGEMGMVS STRQYLSVLQ XSKRLEQQQQ SLNVLLLIKK REVILGLFIY HCRNVSTRTS  360
GSLVGX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A2e-21176246274NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2R6R0G13e-66A0A2R6R0G1_ACTCH; Nuclear transcription factor Y subunit A-3 like