PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_7256_iso_2
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family NF-YA
Protein Properties Length: 239aa    MW: 27291.5 Da    PI: 8.3836
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_7256_iso_2genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA50.76e-16176210136
                           CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrk 36 
                                         dep+YVNaKQy++Il+RRq Rakle+++kl +k+rk
  cra_locus_7256_iso_2_len_715_ver_3 176 DEPIYVNAKQYKAILRRRQFRAKLEAQNKL-SKARK 210
                                         79****************************.88887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005217.3E-8174234IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115217.375175210IPR001289Nuclear transcription factor Y subunit A
PfamPF020452.9E-12177210IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860180200IPR018362CCAAT-binding factor, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
XESDAQESTL SRNLSNKMMN PSEHCQTSKQ LGVYFQDQDS SSTQSTGQSY CEVVNIETKG  60
YGKDTLLAGS CITNIKASEN QSKSAISYQD HDLPHSPIHY RQLACFPLPY PDPGIQFAET  120
VYELSTYYIX HTSSRGCWRE SPLDAPMRYF PFKFVQVHSQ MVGTRVPLPL DHPPHDEPIY  180
VNAKQYKAIL RRRQFRAKLE AQNKLSKARK VCNTTMSELF IHMTCICKHI FVSKTVFSL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2R6R0G12e-41A0A2R6R0G1_ACTCH; Nuclear transcription factor Y subunit A-3 like