PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_72631_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

FAR1

Protein Properties

Length: 143aa MW: 16125.6 Da PI: 4.6873

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_72631_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	55.4	2e-17	66	142	3	80
FAR1 3 YneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkw 76 Y++YA+ +GF+vr+ k+++ ++++ ++t++Cskeg ++++ ++ + +++etrtgCka++ +++g+w cra_locus_72631_iso_1_len_476_ver_3 66 YCDYAQAMGFNVRRGKQYYFMGTKRVRSKTYCCSKEGVKDDKADA-NGVGYKKPETRTGCKAMISFACDDNGQW 138 99*************************************9988.888899****************** PP FAR1 77 evtk 80 +vtk cra_locus_72631_iso_1_len_476_ver_3 139 KVTK 142 97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.1E-14	66	142	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 143 aa Download sequence Send to blast
MENSGLDLER HEPISGDSDE EEAVRPRSGG EVVDVNEGPD EAHVHELEKN LLDQVVYSEE 60 EAYMSYCDYA QAMGFNVRRG KQYYFMGTKR VRSKTYCCSK EGVKDDKADA NGVGYKKPET 120 RTGCKAMISF ACDDNGQWKV TKX

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011093602.1	1e-85	uncharacterized protein LOC105173527 isoform X1
Refseq	XP_011093603.1	3e-86	uncharacterized protein LOC105173527 isoform X2
TrEMBL	A0A022QPC4	1e-81	A0A022QPC4_ERYGU; Uncharacterized protein
STRING	Migut.J01148.1.p	2e-81	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA14517	7	9