PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_7294_iso_2

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

NAC

Protein Properties

Length: 386aa MW: 42866 Da PI: 7.5291

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_7294_iso_2	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	176.9	5.7e-55	17	143	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrk 74 lppGfrFhPtdeel+++yL kkv ++++++ ++i evd++kvePwdLp ++k +ekewyfF+ rdkky+tg r+ cra_locus_7294_iso_2_len_1465_ver_3 17 LPPGFRFHPTDEELITHYLSKKVLETNFSA-KAIGEVDMNKVEPWDLPWRAKMGEKEWYFFCVRDKKYPTGLRT 89 79************************99.89***********888999**************** PP NAM 75 nratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 nrat++gyWkatgkdke+++ +++lvg+kktLvfykgrapkgekt+Wv heyrle cra_locus_7294_iso_2_len_1465_ver_3 90 NRATAAGYWKATGKDKEIFR-GKSLVGMKKTLVFYKGRAPKGEKTNWVTHEYRLE 143 ****************.999***************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.23E-61	13	167	IPR003441	NAC domain
PROSITE profile	PS51005	58.648	17	167	IPR003441	NAC domain
Pfam	PF02365	8.8E-28	18	142	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 386 aa Download sequence Send to blast
MENYSGLIND DDDQLELPPG FRFHPTDEEL ITHYLSKKVL ETNFSAKAIG EVDMNKVEPW 60 DLPWRAKMGE KEWYFFCVRD KKYPTGLRTN RATAAGYWKA TGKDKEIFRG KSLVGMKKTL 120 VFYKGRAPKG EKTNWVTHEY RLEGKFSLLN LPKSAKNEWV ICRVFQKTAG GKKVHISGLA 180 RSNSFGNNDL VSSLLPPLMD SSPYNNGNST KSTPVAAESG HVHCFSNSIT AQKSQQEEIF 240 NYFNNNNNNP FVVSSTNGGY SSSFTNGGYS SWGGQQLLVP PPSIVQGNYQ FSPSFQMQDP 300 SILRSLLENC GQNMMKQGFK IEKDGISGSQ ETGVSTDINT EISSVVSNLE MGRKSSLEDH 360 QEVPPPSSSS AAAVVGPQDL DCLWGY

Sequence ? help Back to Top

Protein Sequence Length: 386 aa Download sequence Send to blast

MENYSGLIND DDDQLELPPG FRFHPTDEEL ITHYLSKKVL ETNFSAKAIG EVDMNKVEPW  60
DLPWRAKMGE KEWYFFCVRD KKYPTGLRTN RATAAGYWKA TGKDKEIFRG KSLVGMKKTL  120
VFYKGRAPKG EKTNWVTHEY RLEGKFSLLN LPKSAKNEWV ICRVFQKTAG GKKVHISGLA  180
RSNSFGNNDL VSSLLPPLMD SSPYNNGNST KSTPVAAESG HVHCFSNSIT AQKSQQEEIF  240
NYFNNNNNNP FVVSSTNGGY SSSFTNGGYS SWGGQQLLVP PPSIVQGNYQ FSPSFQMQDP  300
SILRSLLENC GQNMMKQGFK IEKDGISGSQ ETGVSTDINT EISSVVSNLE MGRKSSLEDH  360
QEVPPPSSSS AAAVVGPQDL DCLWGY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	7e-54	9	173	9	171	NO APICAL MERISTEM PROTEIN
1ut4_B	7e-54	9	173	9	171	NO APICAL MERISTEM PROTEIN
1ut7_A	7e-54	9	173	9	171	NO APICAL MERISTEM PROTEIN
1ut7_B	7e-54	9	173	9	171	NO APICAL MERISTEM PROTEIN
4dul_A	7e-54	9	173	9	171	NAC domain-containing protein 19
4dul_B	7e-54	9	173	9	171	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027169747.1	1e-179	NAC domain-containing protein 100-like
Swissprot	Q9FLJ2	1e-130	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A068UVF5	1e-174	A0A068UVF5_COFCA; Uncharacterized protein
STRING	EOY21905	1e-164	(Theobroma cacao)

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]