PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_73326_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family MYB_related
Protein Properties Length: 231aa    MW: 25998.4 Da    PI: 6.8048
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_73326_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.71.1e-07146747
                                         HHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
                      Myb_DNA-binding  7 eEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                                         eE+  l+ +++++G g W+tI +          R+  ++k++w+++
  cra_locus_73326_iso_1_len_693_ver_3  1 EEEAALKAGIRKYGVGKWSTILKDSEfstvlRSRSNVDLKDKWRNL 46
                                         8*******************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.38E-11148IPR009057Homeodomain-like
PROSITE profilePS5129410.855153IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.2E-10146IPR009057Homeodomain-like
CDDcd116601.00E-17147No hitNo description
SMARTSM005268.5E-13108173IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.103.1E-15108181IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467853.81E-14108179IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150423.03110178IPR005818Linker histone H1/H5, domain H15
PfamPF005386.9E-11114172IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
EEEAALKAGI RKYGVGKWST ILKDSEFSTV LRSRSNVDLK DKWRNLNCMA NGLGSRHRPR  60
VLVKINPPTA KYDEEATVRI EVDRKDPEAH DATPVAVSRE VRQDPDSKKS ITRLEDVVLE  120
AIRKLNEPRG SSRPAIAQYI EDHYSAPSDF EKALAANLKI LTDNGLIIKV KNQYRIAPRE  180
TSFSVEKEPF SLPTDGTTKG SSEDERNICM LLTKAQIDAE LEKMMSMSPE E
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats, but may also bind to the single telomeric strand. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011099387.11e-100telomere repeat-binding factor 1 isoform X3
SwissprotB4FT402e-54SMH2_MAIZE; Single myb histone 2
TrEMBLA0A2G9H8J91e-100A0A2G9H8J9_9LAMI; Uncharacterized protein
STRINGMigut.H00343.1.p2e-89(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51222235
Publications ? help Back to Top
  1. Soderlund C, et al.
    Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.
    PLoS Genet., 2009. 5(11): p. e1000740
    [PMID:19936069]