PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_7344_iso_4

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

LBD

Protein Properties

Length: 169aa MW: 19657.1 Da PI: 6.2586

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_7344_iso_4	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	132.1	2.3e-41	10	110	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvy 74 aCaaCk++rr+C+++C+lapyfpa+q+k+f+n+h+lFG+sn++k+lk+l++ee re+am+s+ yeA++r r Pvy cra_locus_7344_iso_4_len_824_ver_3 10 ACAACKYQRRRCSSECILAPYFPANQTKAFQNAHRLFGVSNIMKILKQLSTEEqREEAMKSIKYEADMRERYPVY 84 7**********************************************66555***************** PP DUF260 75 Gavgvilklqqqleqlkaelallkee 100 G++g+i +l+qql+q+ +el+++ e+ cra_locus_7344_iso_4_len_824_ver_3 85 GCAGIICQLRQQLRQAIEELHYVYEQ 110 ******************998776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.86	9	111	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	8.6E-40	10	106	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 169 aa Download sequence Send to blast
MTVKGGTSPA CAACKYQRRR CSSECILAPY FPANQTKAFQ NAHRLFGVSN IMKILKQLST 60 EEQREEAMKS IKYEADMRER YPVYGCAGII CQLRQQLRQA IEELHYVYEQ LGIYREQQFN 120 GGNELPPNFP FMGNEYDEQL NINEGHDNFD KNLIGFEQYY NLTRNNDNS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-28	2	132	4	129	LOB family transfactor Ramosa2.1
5ly0_B	3e-28	2	132	4	129	LOB family transfactor Ramosa2.1
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027124413.1	2e-65	LOB domain-containing protein 27-like
Refseq	XP_027169677.1	9e-65	LOB domain-containing protein 27-like
Swissprot	Q9STS6	3e-40	LBD27_ARATH; LOB domain-containing protein 27
TrEMBL	A0A068V302	2e-63	A0A068V302_COFCA; Uncharacterized protein
STRING	XP_009768780.1	9e-61	(Nicotiana sylvestris)

Publications ? help Back to Top
Kim MJ,Kim M,Kim J Combinatorial interactions between LBD10 and LBD27 are essential for male gametophyte development in Arabidopsis. Plant Signal Behav, 2015. 10(8): p. e1044193 [PMID:26252070] Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310]