PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_7357_iso_2

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

C2H2

Protein Properties

Length: 223aa MW: 25433.9 Da PI: 9.8815

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_7357_iso_2	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.6	5e-06	94	116	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H cra_locus_7357_iso_2_len_817_ver_3 94 FVCEICNKGFQRDQNLQLHRRGH 116 89*******************88 PP
2	zf-C2H2	17	1.6e-05	170	192	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H++t+ cra_locus_7357_iso_2_len_817_ver_3 170 WKCDKCSKKYAVQSDWKAHQKTC 192 58*******************98 PP
3	zf-C2H2	10.9	0.0015	200	218	5	23
TTTEEESSHHHHHHHHHHT CS zf-C2H2 5 dCgksFsrksnLkrHirtH 23 dCg+ Fsr++++ +H + cra_locus_7357_iso_2_len_817_ver_3 200 DCGTIFSRRDSFITHRAFC 218 8**************8765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	5.8E-6	93	116	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	2.0E-8	93	116	No hit	No description
SMART	SM00355	0.017	94	116	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.949	94	116	IPR007087	Zinc finger, C2H2
Pfam	PF12171	2.9E-5	94	116	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE pattern	PS00028	0	96	116	IPR007087	Zinc finger, C2H2
SMART	SM00355	82	135	165	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	6.6E-6	158	191	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	2.0E-8	165	191	No hit	No description
SMART	SM00355	94	170	190	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 223 aa Download sequence Send to blast
MMKDLILVHQ QQQSVLEENM SNLTSASNEA SASSSVNRND SGNGSIYPPP QQHYFVPPNQ 60 PPPPKKKRNL PGNPDPDAEV IALSPKALLA TNRFVCEICN KGFQRDQNLQ LHRRGHNLPW 120 KLRQRTTTEI RKRVYICPEP SCVHHNPARA LGDLTGIKKH YSRKHGEKKW KCDKCSKKYA 180 VQSDWKAHQK TCGTREYKCD CGTIFSRRDS FITHRAFCDA LAE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	1e-34	166	223	3	60	Zinc finger protein JACKDAW
5b3h_F	1e-34	166	223	3	60	Zinc finger protein JACKDAW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003627109.1	1e-132	protein indeterminate-domain 7
Swissprot	Q8H1F5	1e-115	IDD7_ARATH; Protein indeterminate-domain 7
TrEMBL	G7LHG9	1e-130	G7LHG9_MEDTR; C2H2-like zinc finger protein, putative
STRING	AET01585	1e-131	(Medicago truncatula)

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]