PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_7378_iso_3
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family DBB
Protein Properties Length: 288aa    MW: 30996.6 Da    PI: 6.0592
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_7378_iso_3genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box23.98.4e-082566438
                             zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg.......Ht 38
                                         + C+ +++  + lfC++++ ++C +C ++ H         H+
  cra_locus_7378_iso_3_len_1360_ver_3 25 KQCDYCNSAAALLFCRTDSAFMCISCDSKVHATnklgsrqHE 66
                                         68*******9*******************9965556666665 PP
2zf-B_box27.18.6e-0968113342
                             zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                                           ++C+ +e+ +++  C+ +   lC +C   +H+       H+++p+
  cra_locus_7378_iso_3_len_1360_ver_3  68 VWMCEVCEQAPASVTCKADAAALCVTCDRDIHSAnplarrHERSPV 113
                                          689*****************************66888888998875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003362.3E-62270IPR000315B-box-type zinc finger
PfamPF006433.0E-62567IPR000315B-box-type zinc finger
PROSITE profilePS501199.1152770IPR000315B-box-type zinc finger
CDDcd000211.22E-72770No hitNo description
PROSITE profilePS5011910.80866113IPR000315B-box-type zinc finger
PfamPF006437.2E-768113IPR000315B-box-type zinc finger
CDDcd000218.72E-969113No hitNo description
SMARTSM003362.3E-1071113IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MGMQETVGIG GGGKNFPAGW GLVAKQCDYC NSAAALLFCR TDSAFMCISC DSKVHATNKL  60
GSRQHERVWM CEVCEQAPAS VTCKADAAAL CVTCDRDIHS ANPLARRHER SPVVPFYDTA  120
ESVVKSTAAV AAAANFLVPP VHNNGVSENL STCLANDSYV TDSSWISSSD PTAPRVAADG  180
PDLKSMEFLF TDSDNYLDFD YPISSVQQHY SSGNDGVVPV QTTKAPPIPT TQLPVAGHSS  240
EKHFEIDFTK SHMTSYNNSY NPHSLSHSVS IQHLISITSQ LIAYLGRV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027068408.11e-114zinc finger protein CONSTANS-LIKE 4-like
SwissprotQ940T93e-63COL4_ARATH; Zinc finger protein CONSTANS-LIKE 4
TrEMBLA0A068U4411e-113A0A068U441_COFCA; Uncharacterized protein
STRINGVIT_11s0052g01800.t013e-83(Vitis vinifera)