PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_7403_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family GATA
Protein Properties Length: 339aa    MW: 37297.3 Da    PI: 7.341
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_7403_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA57.51.8e-18256289134
                                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                                          Cs+C++ kTp+WR gp g+ktLCnaCG++y++ +
  cra_locus_7403_iso_1_len_1486_ver_3 256 CSHCQVQKTPQWRTGPMGPKTLCNACGVRYKSGR 289
                                          *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169927.0E-828337IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011411.622250286IPR000679Zinc finger, GATA-type
SMARTSM004013.8E-15250304IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.1E-14254287IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577162.28E-14254313No hitNo description
CDDcd002029.64E-15255312No hitNo description
PfamPF003203.0E-16256289IPR000679Zinc finger, GATA-type
PROSITE patternPS003440256281IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MEFVAERALK SSFLSDFSSK QSQQLCIDDS SAWVAATAGG GGLNSVACDD FSVDDLLDFS  60
DKDFKDGCFQ EDEEKSSLLV SSQHRNSNSS SFSETDDFGS LLAAELVXSD DLENLEWLSQ  120
FVDDSQSELS MLCPAGSFKD HKTVVNLPAN RSEPGVQKLI GPSFPLPVSR KMRSKRARPN  180
GGRVWSRSPS LTTTETSSIS SSSSYGSSSL SPFVWANPAQ DFELFSTVEK PPVKKQKKKQ  240
QPTADTTTGS QTLRRCSHCQ VQKTPQWRTG PMGPKTLCNA CGVRYKSGRL FPEYRPACSP  300
TFSQEIHSNS HRKVLEMRRK KEGSTGLVET GFTPMVQSF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027159703.11e-123GATA transcription factor 5-like
TrEMBLA0A068TLY91e-118A0A068TLY9_COFCA; GATA transcription factor
STRINGXP_009802570.11e-111(Nicotiana sylvestris)