PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_7403_iso_2
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family GATA
Protein Properties Length: 209aa    MW: 23134.4 Da    PI: 11.0402
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_7403_iso_2genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.59.1e-19126159134
                                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                                          Cs+C++ kTp+WR gp g+ktLCnaCG++y++ +
  cra_locus_7403_iso_2_len_1690_ver_3 126 CSHCQVQKTPQWRTGPMGPKTLCNACGVRYKSGR 159
                                          *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011411.622120156IPR000679Zinc finger, GATA-type
SMARTSM004013.8E-15120174IPR000679Zinc finger, GATA-type
SuperFamilySSF577169.5E-15124183No hitNo description
Gene3DG3DSA:3.30.50.105.3E-15124157IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.25E-13125182No hitNo description
PfamPF003201.5E-16126159IPR000679Zinc finger, GATA-type
PROSITE patternPS003440126151IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MLCPAGSFKD HKTVVNLPAN RSEPGVQKLI GPSFPLPVSR KMRSKRARPN GGRVWSRSPS  60
LTTTETSSIS SSSSYGSSSL SPFVWANPAQ DFELFSTVEK PPVKKQKKKQ QPTADTTTGS  120
QTLRRCSHCQ VQKTPQWRTG PMGPKTLCNA CGVRYKSGRL FPEYRPACSP TFSQEIHSNS  180
HRKVLEMRRK KEGSTGLVET GFTPMVQSF
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027112156.12e-73GATA transcription factor 5-like
SwissprotQ9FH573e-47GATA5_ARATH; GATA transcription factor 5
TrEMBLA0A068TLY94e-72A0A068TLY9_COFCA; GATA transcription factor
STRINGXP_009802570.15e-63(Nicotiana sylvestris)
STRINGXP_009631302.17e-63(Nicotiana tomentosiformis)