PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_7421_iso_6
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family bZIP
Protein Properties Length: 150aa    MW: 17398.9 Da    PI: 11.043
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_7421_iso_6genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_130.11.1e-0920681563
                                        HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                              bZIP_1 15 eAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63
                                         +A rsR RK+++i++Le+ v++L+a  +++ +ele l  +   l +e+
  cra_locus_7421_iso_6_len_517_ver_3 20 QSAHRSRVRKLQYIAQLERTVQVLQATGSKMSSELEFLDHQNLILNMEN 68
                                        59**********************************9998887777666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003386.5E-51170IPR004827Basic-leucine zipper domain
CDDcd147038.09E-121161No hitNo description
SuperFamilySSF579591.13E-61963No hitNo description
PfamPF001701.6E-72067IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1702.0E-72064No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    Send to blast
RPGEAKPSVA KSDTKRAKQQ SAHRSRVRKL QYIAQLERTV QVLQATGSKM SSELEFLDHQ  60
NLILNMENRA LKQRLDSLSQ EQLIKQFEHE MLEREVGRLQ ALCRLQGQEQ QLKMQHQQQQ  120
PQINPKHRRT KSKDAIISSS RSPINGQLQI
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in the sporophytic control of cell wall patterning and gametophytic control of pollen development. May play a role in the control of metabolic pathways regulating cellular transport and lipid metabolism. {ECO:0000269|PubMed:17719007, ECO:0000269|PubMed:19449183}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027093525.18e-51basic leucine zipper 34-like
SwissprotF4IN233e-22BZP34_ARATH; Basic leucine zipper 34
TrEMBLA0A068UQT95e-49A0A068UQT9_COFCA; Uncharacterized protein
STRINGXP_009765647.17e-44(Nicotiana sylvestris)
Publications ? help Back to Top
  1. Jiang J,Zhang Z,Cao J
    Pollen wall development: the associated enzymes and metabolic pathways.
    Plant Biol (Stuttg), 2013. 15(2): p. 249-63
    [PMID:23252839]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Gibalová A, et al.
    Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte.
    Plant Reprod, 2017. 30(1): p. 1-17
    [PMID:27896439]
  4. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]