PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_7483_iso_4

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

Trihelix

Protein Properties

Length: 429aa MW: 46854.1 Da PI: 8.4735

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_7483_iso_4	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	57.7	3e-18	213	299	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergferspkqCkekwenlnkrykkikegekkrt 72 +W+++ + +L+ea++e+ l+rg+l++ +Weev++ + r + ++s +qCk+k +nl+kryk ++++ ++ cra_locus_7483_iso_4_len_1414_ver_3 213 EWSDSAIACLLEAYTEKFMMLNRGNLRGRDWEEVAAMVseRCDKQSKSVEQCKNKVDNLKKRYKLERHRLTNG- 285 5***********************************666668899*********************9. PP trihelix 73 sessstcpyfdqle 86 s s++p+f+q+e cra_locus_7483_iso_4_len_1414_ver_3 286 GVSASHWPWFKQME 299 566679*****8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	7.4E-21	211	301	No hit	No description
Gene3D	G3DSA:3.40.1160.10	3.1E-14	349	428	IPR001048	Aspartate/glutamate/uridylate kinase
SuperFamily	SSF53633	8.38E-10	356	416	IPR001048	Aspartate/glutamate/uridylate kinase

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006221	Biological Process	pyrimidine nucleotide biosynthetic process
GO:0005737	Cellular Component	cytoplasm
GO:0033862	Molecular Function	UMP kinase activity

Sequence ? help Back to Top
Protein Sequence Length: 429 aa Download sequence Send to blast
XRNYLSPNGL SPFDGFTFAI SRHIQQDXRR HPLHVPDVVC PLTSPSPNPN GXPLTPPSMA 60 SCDDDFSLLG DDTTTATAAT VHPPNPNPNL IHRRQSFTHR NISATGDNDV VSPDADGYSD 120 GGFCSSQPNS KSNNNHNTPS FHVVNVNPYD ADPNPFDTDP VPNKSRLNNN IHSPHDKRTD 180 REEVSDSGTP YPYKRARASS SAGGGDYRKD REEWSDSAIA CLLEAYTEKF MMLNRGNLRG 240 RDWEEVAAMV SERCDKQSKS VEQCKNKVDN LKKRYKLERH RLTNGGVSAS HWPWFKQMEQ 300 IVGNSLSTKT AATTDDDKSG GGPTSSGKQS KRYGSPAASP GGQINNVKSK ATTSARWRRV 360 VFKISGSALA GTAPQNIDPK VAMLIAREVS IACRMGVEVA IVVGGRNFFC GESWVSTTGL 420 DRCTAYQIG

Sequence ? help Back to Top

Protein Sequence Length: 429 aa Download sequence Send to blast

XRNYLSPNGL SPFDGFTFAI SRHIQQDXRR HPLHVPDVVC PLTSPSPNPN GXPLTPPSMA  60
SCDDDFSLLG DDTTTATAAT VHPPNPNPNL IHRRQSFTHR NISATGDNDV VSPDADGYSD  120
GGFCSSQPNS KSNNNHNTPS FHVVNVNPYD ADPNPFDTDP VPNKSRLNNN IHSPHDKRTD  180
REEVSDSGTP YPYKRARASS SAGGGDYRKD REEWSDSAIA CLLEAYTEKF MMLNRGNLRG  240
RDWEEVAAMV SERCDKQSKS VEQCKNKVDN LKKRYKLERH RLTNGGVSAS HWPWFKQMEQ  300
IVGNSLSTKT AATTDDDKSG GGPTSSGKQS KRYGSPAASP GGQINNVKSK ATTSARWRRV  360
VFKISGSALA GTAPQNIDPK VAMLIAREVS IACRMGVEVA IVVGGRNFFC GESWVSTTGL  420
DRCTAYQIG

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00340	DAP	Transfer from AT3G10030	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027177086.1	0.0	uncharacterized protein LOC113776178 isoform X2
TrEMBL	A0A068V3V3	0.0	A0A068V3V3_COFCA; Uncharacterized protein
STRING	XP_009802965.1	1e-156	(Nicotiana sylvestris)