PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_7495_iso_2

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

C3H

Protein Properties

Length: 353aa MW: 38522 Da PI: 4.2261

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_7495_iso_2	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20.9	6.2e-07	297	315	6	25
-SGGGGTS--TTTTT-SS-S CS zf-CCCH 6 CrffartGtCkyGdrCkFaH 25 C+ff++ G+C G++C+F H cra_locus_7495_iso_2_len_1056_ver_3 297 CDFFSK-GWCIKGSSCRFVH 315 ****.*********** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1000.10	1.9E-4	291	318	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.601	291	318	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	3.27E-6	293	316	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.2E-4	297	315	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010220	Biological Process	positive regulation of vernalization response
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence Send to blast
RPGALAKSAS LSAEARYFLS TSQRSAPPFY LSLLCSPLDG LQTVPTLSKY RIVRCYILFP 60 DLQCPHPPEA ADPPPKESDL ESVTEPDIGD DDEYDIEYEE VEEEIEVEEE IEVEEEIEVE 120 EEIEEEDQDG ESEIAETLAP ANLNYENDIT EAIEPRCPGE QISSASATIG TSVALCGTTI 180 GDYSGICRIA CLDTKRQEDK SQVGGDKDAK SRNGGASLFD KGERSSENTH LFGGETDAPA 240 INVDASSRKA NGDLHCKKER NQTAGEDSKQ GSSRVSPRSL SSSTEFSDGS KQQPMVCDFF 300 SKGWCIKGSS CRFVHKRDHM TVSSQYVEGH LNAAEEKTKL VNGKVVPSSR GLX

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence Send to blast

RPGALAKSAS LSAEARYFLS TSQRSAPPFY LSLLCSPLDG LQTVPTLSKY RIVRCYILFP  60
DLQCPHPPEA ADPPPKESDL ESVTEPDIGD DDEYDIEYEE VEEEIEVEEE IEVEEEIEVE  120
EEIEEEDQDG ESEIAETLAP ANLNYENDIT EAIEPRCPGE QISSASATIG TSVALCGTTI  180
GDYSGICRIA CLDTKRQEDK SQVGGDKDAK SRNGGASLFD KGERSSENTH LFGGETDAPA  240
INVDASSRKA NGDLHCKKER NQTAGEDSKQ GSSRVSPRSL SSSTEFSDGS KQQPMVCDFF  300
SKGWCIKGSS CRFVHKRDHM TVSSQYVEGH LNAAEEKTKL VNGKVVPSSR GLX