PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_74965_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

SBP

Protein Properties

Length: 186aa MW: 20811.7 Da PI: 7.528

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_74965_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	133.7	6.1e-42	76	152	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrk 75 Cqv++Ceadls++k+yh+rhkvCe h+ka+vv+v+g +qrfCqqCsrfh+lsefD++krsCrrrLa+hnerrrk cra_locus_74965_iso_1_len_791_ver_3 76 CQVDKCEADLSSCKKYHQRHKVCEYHAKAQVVIVAGFRQRFCQQCSRFHDLSEFDDAKRSCRRRLAGHNERRRK 149 ************************************************************************** PP --- CS SBP 76 kqa 78 +++ cra_locus_74965_iso_1_len_791_ver_3 150 HSS 152 875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51141	31.701	73	150	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	9.03E-38	75	153	IPR004333	Transcription factor, SBP-box
Gene3D	G3DSA:4.10.1100.10	1.7E-32	75	137	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	7.4E-32	76	149	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 186 aa Download sequence Send to blast
XTLFSFRAAA AAAAKEEEEE YDDSAEEEEE EDDQFEAEES YNPKKRMNLG GGSAGKKGST 60 TTMGGGGGVA VVIQGCQVDK CEADLSSCKK YHQRHKVCEY HAKAQVVIVA GFRQRFCQQC 120 SRFHDLSEFD DAKRSCRRRL AGHNERRRKH SSELHGEAAA ATRIKKNQCR QSGEGGRTLH 180 HDFHIR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	3e-35	73	149	8	84	squamosa promoter binding protein-like 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional factor. Binds to the promoter of the SQUAMOSA gene.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00634	PBM	Transfer from PK22320.1	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010260271.1	1e-46	PREDICTED: squamosa promoter-binding protein 1
Swissprot	Q38740	4e-41	SBP2_ANTMA; Squamosa promoter-binding protein 2
TrEMBL	A0A1U8A075	3e-45	A0A1U8A075_NELNU; squamosa promoter-binding protein 1
STRING	XP_010260271.1	6e-46	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA749	24	105

Publications ? help Back to Top
Klein J,Saedler H,Huijser P A new family of DNA binding proteins includes putative transcriptional regulators of the Antirrhinum majus floral meristem identity gene SQUAMOSA. Mol. Gen. Genet., 1996. 250(1): p. 7-16 [PMID:8569690]