PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_75074_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

C3H

Protein Properties

Length: 96aa MW: 10965.4 Da PI: 9.0482

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_75074_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	24.9	3.5e-08	20	46	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+ff++tG Cky + CkF H++ cra_locus_75074_iso_1_len_383_ver_3 20 PGEPECSFFMKTGDCKYKSGCKFPHPK 46 5899*******************9985 PP
2	zf-CCCH	37.4	4.2e-12	68	93	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +++++C++++++G+CkyG+ Ck+ H+ cra_locus_75074_iso_1_len_383_ver_3 68 PGQPICSHYHQYGICKYGPACKYDHP 93 5899*********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	0.01	19	46	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.065	19	47	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.4E-5	21	46	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	5.23E-6	23	48	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	4.2E-4	25	45	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	7.2E-7	64	92	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	3.9E-6	67	94	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.037	67	95	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	3.3E-9	69	93	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	7.2E-5	72	92	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 96 aa Download sequence Send to blast
XINFQLPQLN MLVDEHPERP GEPECSFFMK TGDCKYKSGC KFPHPKKRFS KAKASPFVLS 60 DKGLPLRPGQ PICSHYHQYG ICKYGPACKY DHPSNF

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011072924.1	1e-41	zinc finger CCCH domain-containing protein 67 isoform X1
Refseq	XP_028116350.1	6e-42	zinc finger CCCH domain-containing protein 67 isoform X2
Swissprot	Q5RJC5	1e-29	C3H67_ARATH; Zinc finger CCCH domain-containing protein 67
TrEMBL	A0A2G9I3H6	3e-41	A0A2G9I3H6_9LAMI; CCCH-type Zn-finger protein
STRING	Migut.D01307.1.p	8e-37	(Erythranthe guttata)
STRING	Migut.I00264.1.p	3e-36	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4468	23	43